From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2482 [new locus tag: SA_RS14200 ]
  • pan locus tag?: SAUPAN006447000
  • symbol: pcp
  • pan gene symbol?: pcp
  • synonym:
  • product: pyrrolidone-carboxylate peptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2482 [new locus tag: SA_RS14200 ]
  • symbol: pcp
  • product: pyrrolidone-carboxylate peptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 2793791..2794429
  • length: 639
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGCACATTTTAGTAACAGGGTTTGCGCCTTTTGACAATCAAAATATCAATCCCTCATGG
    GAAGCTGTGACTCAACTAGAAGATATTATTGGCACACATACAATCGATAAATTAAAACTA
    CCAACCTCTTTTAAGAAAGTAGATAATATTATAAATAAAACGTTGGCATCTAATCATTAT
    GATGTTGTACTAGCTATAGGACAAGCTGGTGGTAGAAATGCCATTACCCCAGAACGTGTC
    GCCATTAATATTGATGATGCACGTATTCCAGATAATGATGATTTTCAACCTATTGATCAA
    GCCATTCACTTAGACGGTGCGCCAGCTTATTTTTCAAATTTACCAGTTAAAGCAATGACT
    CAAAGTATTATTAATCAAGGACTTCCTGGAGCACTTTCAAATAGCGCAGGTACGTATGTA
    TGTAATCACGTGCTTTATCACTTAGGTTATTTACAAGATAAGCATTACCCTCACCTACGA
    TTCGGATTTATTCATGTGCCATACATACCAGAGCAGGTCATTGGTAAACCCGATACACCA
    TCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAAT
    GATGAGGATTTACGTATAGCTCTAGGCACAACGGAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    639

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2482 [new locus tag: SA_RS14200 ]
  • symbol: Pcp
  • description: pyrrolidone-carboxylate peptidase
  • length: 212
  • theoretical pI: 5.18638
  • theoretical MW: 23200.2
  • GRAVY: -0.106132

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.19.3?  ExPASy
    Pyroglutamyl-peptidase I Release of an N-terminal pyroglutamyl group from a polypeptide, the second amino acid generally not being Pro
  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides pyroglutamyl-peptidase I (TIGR00504; EC 3.4.19.3; HMM-score: 227.1)
  • TheSEED  :
    • Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
  • PFAM:
    PgaPase (CL0379) Peptidase_C15; Pyroglutamyl peptidase (PF01470; HMM-score: 314.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008302
    • TAT(Tat/SPI): 0.00024
    • LIPO(Sec/SPII): 0.000608
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAMTQSIINQGLPGALSNSAGTYVCNHVLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAISNDEDLRIALGTTE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA2482&oldid=77326"