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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0490 [new locus tag: SACOL_RS02480 ]
  • pan locus tag?: SAUPAN002154000
  • symbol: SACOL0490
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0490 [new locus tag: SACOL_RS02480 ]
  • symbol: SACOL0490
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 490669..490929
  • length: 261
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    TTGAGCGCTTTACTTTATAATGGAGACAAAGATATATCTCACGAAAGAGAATCGAGGTGT
    ATAAACATGTTATTTGTCATTTTAGTTTTATATGTTACTGGTATTGCATTTATTCTACTC
    AGTGTTTTTGGTTCAAAGACTGAAGGATTATCTACGAAACATACTTTATATACCATTGGC
    AGTGCTATTATAACGATTGCTATTTTCATTTCAATTGGCTATGCCATTCAATACTTAACT
    GCAGCGCTTTATGGTTTGTAA
    60
    120
    180
    240
    261

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0490 [new locus tag: SACOL_RS02480 ]
  • symbol: SACOL0490
  • description: hypothetical protein
  • length: 86
  • theoretical pI: 7.50332
  • theoretical MW: 9423.07
  • GRAVY: 0.860465

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108079: hypothetical protein
  • PFAM:
    no clan defined Herpes_US9; Alphaherpesvirus tegument protein US9 (PF06072; HMM-score: 17.6)
    GPCR_A (CL0192) Srg; Srg family chemoreceptor (PF02118; HMM-score: 16)
    ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 14.5)
    and 1 more
    no clan defined HILPDA; Hypoxia-inducible lipid droplet-associated (PF15220; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005702
    • TAT(Tat/SPI): 0.000201
    • LIPO(Sec/SPII): 0.003421
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSALLYNGDKDISHERESRCINMLFVILVLYVTGIAFILLSVFGSKTEGLSTKHTLYTIGSAIITIAIFISIGYAIQYLTAALYGL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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