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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0989 [new locus tag: SACOL_RS05060 ]
  • pan locus tag?: SAUPAN003129000
  • symbol: SACOL0989
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0989 [new locus tag: SACOL_RS05060 ]
  • symbol: SACOL0989
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 997008..997379
  • length: 372
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTTGAAAAAATGGCTTGGAATGGCACTAATAACGCCAATATTAACGTTTATTATATGG
    CTTTTTAATAGCCATACTATCATTACATATTTAAATATATTGTTTTATGTTTCATTAATT
    ATTTTTATTAGCATATTTTTGATTTTACTTGTACAAGAAGGCATTTTTGATGCGACAAGT
    TATGGTTTTAGAAGATTAAAGTATCAAATGTCATCTTCGAAAAAGAAGAAGTCTATCTCT
    GATGATCCATTTTTCAACCCACAAGAGGTAAAAAAAGAGCATTACTTTGTTTCTACATGG
    ATAATCCCCTTATTATTAATAAATATTTTATATTTTATTATGACGATTGTGCTGTCGCTC
    ATCTTAGTATAA
    60
    120
    180
    240
    300
    360
    372

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0989 [new locus tag: SACOL_RS05060 ]
  • symbol: SACOL0989
  • description: hypothetical protein
  • length: 123
  • theoretical pI: 10.0241
  • theoretical MW: 14501.5
  • GRAVY: 0.862602

⊟Function[edit | edit source]

  • TIGRFAM:
    TIGR03943 family protein (TIGR03943; HMM-score: 11.5)
  • TheSEED  :
    • FIG01108250: hypothetical protein
  • PFAM:
    no clan defined DUF3899; Domain of unknown function (DUF3899) (PF13038; HMM-score: 84.9)
    and 2 more
    PalH; PalH/RIM21 (PF08733; HMM-score: 8.6)
    DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00253
    • TAT(Tat/SPI): 0.000153
    • LIPO(Sec/SPII): 0.010417
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLKKWLGMALITPILTFIIWLFNSHTIITYLNILFYVSLIIFISIFLILLVQEGIFDATSYGFRRLKYQMSSSKKKKSISDDPFFNPQEVKKEHYFVSTWIIPLLLINILYFIMTIVLSLILV

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Integral membrane [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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