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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1007 [new locus tag: SACOL_RS05145 ]
- pan locus tag?: SAUPAN003174000
- symbol: SACOL1007
- pan gene symbol?: yjbI
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1007 [new locus tag: SACOL_RS05145 ]
- symbol: SACOL1007
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1016179..1016544
- length: 366
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237302 NCBI
- RefSeq: YP_185875 NCBI
- BioCyc: see SACOL_RS05145
- MicrobesOnline: 912476 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGACAACAACACCATATGACATCATTGGTAAAGAAGCGTTATACGATATGATTGATTAT
TTTTACACCCTTGTAGAAAAAGATGAACGACTTAATCACCTGTTTCCAGGAGATTTTGCA
GAAACAAGTCGTAAACAAAAACAATTTTTAACACAGTTTTTGGGCGGTCCAAACATTTAT
ACCGAAGAACACGGACATCCTATGCTAAGAAAAAGACATATAGATTTTACAATCACTGAA
TTTGAAAGAGATGCATGGTTAGAAAATATGCAGACAGCAATTAATCGCGCTGCGTTTCCA
CAAGGTGTTGGAGATTATTTATTTGAGCGCTTAAGATTAACTGCTAATCATATGGTGAAT
TCCTAA60
120
180
240
300
360
366
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1007 [new locus tag: SACOL_RS05145 ]
- symbol: SACOL1007
- description: hypothetical protein
- length: 121
- theoretical pI: 5.56049
- theoretical MW: 14280
- GRAVY: -0.566942
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001857
- TAT(Tat/SPI): 0.000713
- LIPO(Sec/SPII): 0.000231
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTTTPYDIIGKEALYDMIDYFYTLVEKDERLNHLFPGDFAETSRKQKQFLTQFLGGPNIYTEEHGHPMLRKRHIDFTITEFERDAWLENMQTAINRAAFPQGVGDYLFERLRLTANHMVNS
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas
- protein localization: Cytoplasmic [1]
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)
⊟Relevant publications[edit | edit source]
Suzanne E Dale, Amanda Doherty-Kirby, Gilles Lajoie, David E Heinrichs
Role of siderophore biosynthesis in virulence of Staphylococcus aureus: identification and characterization of genes involved in production of a siderophore.
Infect Immun: 2004, 72(1);29-37
[PubMed:14688077] [WorldCat.org] [DOI] (P p)