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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1771 [new locus tag: SACOL_RS09060 ]
  • pan locus tag?: SAUPAN004376000
  • symbol: SACOL1771
  • pan gene symbol?: —
  • synonym:
  • product: OsmC/Ohr family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1771 [new locus tag: SACOL_RS09060 ]
  • symbol: SACOL1771
  • product: OsmC/Ohr family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1810177..1810623
  • length: 447
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGCATCAACATGACTTTAAAGTCCAAACTTCTTGGCAAGGTGGTCGTAACAATGTCGGA
    AACGTTCAAGGCGACATACTTTCAGAGAATATTTCTATACCTGCTTCTTTAGGTGGTGTT
    GGTATAGGAACAAATCCCGATGAAATGTTAGTATCAGCCGCTTCATCATGTTATATCATC
    TCATTAGCAGCTACTCTTGAACGTGCAAAGTTCACAGATATTTCAATTGAACAACAATCG
    ATTGGAACAGCTTGTTTAAATAACGGAAAATTCAGTATGTCAAAAATTGTGCACCATCCT
    CAAATTCAAATTCCAAGTGATCAAATAGCACAATTAGAAAAGCGATTACCAAAATTGATA
    ACAATTGCAGATAATAATTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAA
    ATCTATCCCATCATTCAGGCCAAATAA
    60
    120
    180
    240
    300
    360
    420
    447

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1771 [new locus tag: SACOL_RS09060 ]
  • symbol: SACOL1771
  • description: OsmC/Ohr family protein
  • length: 148
  • theoretical pI: 7.50798
  • theoretical MW: 16070.3
  • GRAVY: -0.107432

⊟Function[edit | edit source]

  • TIGRFAM:
    peroxiredoxin, SACOL1771 subfamily (TIGR03563; HMM-score: 203.3)
    and 2 more
    Cellular processes Cellular processes Detoxification peroxiredoxin, Ohr subfamily (TIGR03561; HMM-score: 47.6)
    Cellular processes Cellular processes Detoxification peroxiredoxin, OsmC subfamily (TIGR03562; HMM-score: 37.1)
  • TheSEED  :
    • Organic hydroperoxide resistance protein
    Stress Response Oxidative stress Oxidative stress  Organic hydroperoxide resistance protein
  • PFAM:
    no clan defined OsmC; OsmC-like protein (PF02566; HMM-score: 72.2)
    and 1 more
    MadL; Malonate transporter MadL subunit (PF03817; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.052031
    • TAT(Tat/SPI): 0.004726
    • LIPO(Sec/SPII): 0.003716
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHQHDFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTACLNNGKFSMSKIVHHPQIQIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKIYPIIQAK

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2]
  • quantitative data / protein copy number per cell: 75 [3]
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  3. ↑ Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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