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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1829 [new locus tag: SACOL_RS09375 ]
  • pan locus tag?: SAUPAN004475000
  • symbol: SACOL1829
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1829 [new locus tag: SACOL_RS09375 ]
  • symbol: SACOL1829
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1883346..1883789
  • length: 444
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAATAAAGCATCATTTGATAAAAAAGTTAAAAAGCAATTATGGTTTTTGAACAAGAAG
    GAGAAACAAGCATTAGATCAACGATTGTCTTCTATATCTGATGATGACAGCGTTAACTTA
    AATAAGCCTGTTACCTTTGCTAATGCTTACTTAAGACAAAATGTATTTCGAAATAAAGAA
    ACAAAAAGTTATAGTATGTTTGTTACATTAGTAGTGATGATGTTTGCTTATGTTGCTTTA
    TTAGGTTTGTTTTTATTTGGGCTAATTACAAGTCTATCTGGCGTACAATTTTTCGTTAGT
    CCTAAGGTAGATTTATCTACAACTGTTGTTATTTTAACAATTATTGGAGCGATTTTATTA
    ATGTTTGCTAGCATATATTTTATAAAAATTGTGACATCATACTTTACTAAGAAACTTTTA
    GAAATTAAATTTAATTCGAAATAG
    60
    120
    180
    240
    300
    360
    420
    444

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1829 [new locus tag: SACOL_RS09375 ]
  • symbol: SACOL1829
  • description: hypothetical protein
  • length: 147
  • theoretical pI: 10.5648
  • theoretical MW: 16804.9
  • GRAVY: 0.357823

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV1779
  • PFAM:
    Transporter (CL0375) Claudin_2; PMP-22/EMP/MP20/Claudin tight junction (PF13903; HMM-score: 18.5)
    no clan defined DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 17.2)
    and 4 more
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase (PF11712; HMM-score: 14.6)
    Flavi_NS4A; Flavivirus non-structural protein NS4A (PF01350; HMM-score: 12)
    Yip1 (CL0112) DUF1700; Protein of unknown function (DUF1700) (PF08006; HMM-score: 10.9)
    no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 7.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008077
    • TAT(Tat/SPI): 0.000499
    • LIPO(Sec/SPII): 0.002155
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKASFDKKVKKQLWFLNKKEKQALDQRLSSISDDDSVNLNKPVTFANAYLRQNVFRNKETKSYSMFVTLVVMMFAYVALLGLFLFGLITSLSGVQFFVSPKVDLSTTVVILTIIGAILLMFASIYFIKIVTSYFTKKLLEIKFNSK

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Integral membrane [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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