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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2162 [new locus tag: SACOL_RS11365 ]
  • pan locus tag?: SAUPAN005561000
  • symbol: SACOL2162
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2162 [new locus tag: SACOL_RS11365 ]
  • symbol: SACOL2162
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2241164..2241679
  • length: 516
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACAGGTAAAACACATGCTTTATGCGGCATGCTCGTTGGAGCGCTAACAACACAATAT
    TTTCAAACGGATATTTTTTCGTCGGTTACGGTTATCATTCTAGCAACTCTAGCTAGCTTA
    TTACCCGATATATGTCACACTCAAAGTAAGATTGGCAGAAGGTTTAAGGTAATTAGTTTT
    TTTGTGAGATTGATCTTTGGACATCGAACCTTTACGCATTCAATATTATTTATCGCAATC
    ATAGCATTTTTATTGCAAATTATTCAGACGCCTAATTATTATATGGCAGCAATTATAATT
    GGATTAGTGTCACATGTTATACTAGATATGATAACACCAAAAGGCGTGAAATTATTTTAT
    CCGTTACCGTTTAATGTGAAGACACCGATTCAATTTAAAACAGGTGGACTTGTAGACTTA
    TCTTTAGCTACAGCGTTAATGGTCGGAACAGTTTATGTTTTATTTCAGCCTTTCATCAAT
    GATATAATAAGCAACTGGAATACTAAGTTTTTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    516

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2162 [new locus tag: SACOL_RS11365 ]
  • symbol: SACOL2162
  • description: hypothetical protein
  • length: 171
  • theoretical pI: 10.1409
  • theoretical MW: 19086.8
  • GRAVY: 0.827485

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Electron transport cytochrome aa3 quinol oxidase, subunit I (TIGR02882; EC 1.10.3.-; HMM-score: 17.5)
  • TheSEED  :
    • Conserved hypothetical protein
  • PFAM:
    PhosC-NucP1 (CL0368) YdjM; LexA-binding, inner membrane-associated putative hydrolase (PF04307; HMM-score: 113.6)
    and 2 more
    Zn_dep_PLPC; Zinc dependent phospholipase C (PF00882; HMM-score: 12.3)
    no clan defined Wzz; Chain length determinant protein (PF02706; HMM-score: 7.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.036565
    • TAT(Tat/SPI): 0.001928
    • LIPO(Sec/SPII): 0.012435
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTGKTHALCGMLVGALTTQYFQTDIFSSVTVIILATLASLLPDICHTQSKIGRRFKVISFFVRLIFGHRTFTHSILFIAIIAFLLQIIQTPNYYMAAIIIGLVSHVILDMITPKGVKLFYPLPFNVKTPIQFKTGGLVDLSLATALMVGTVYVLFQPFINDIISNWNTKFL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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