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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS00240 [old locus tag: SACOL0045 ]
  • pan locus tag?: SAUPAN000372000
  • symbol: SACOL_RS00240
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS00240 [old locus tag: SACOL0045 ]
  • symbol: SACOL_RS00240
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 51771..53348
  • length: 1578
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (51771..53348) NCBI
  • BioCyc: SACOL_RS00240 BioCyc
  • MicrobesOnline: see SACOL0045

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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    GTGTATGATTTTTTAGAATACTTACATCGTTATTGTATAAAATCAATTAATAATTGGGAG
    GCTGTTGCAGACATATCATGCAAAGTTGAACGTGGAAATGTTAGTACGGGCTATTATGTT
    AAACAAGATAGAATTGTAATAGATGATAGTGATATACCTCCAATTATTAAAATAAGTGGA
    AGTTATATAGCAGCAGACATATTAGTTACTAGATATTTAGATGGAATGGGTGAATTTATA
    AAGGTATCAAAATTAGATCAATCGAGCTATTACGAATGGTTTATGTTTGTTGAAGAAACG
    AGAAGAATATTTAGAGGTACAGAAATAGTTTATCAATTTTTAAAATATCTATTTACGCAT
    ACCTATGAACATAAAAATGAAGAAAAAAGAATAGAAAAACATATGAAAAACATTATCATA
    GATAATCAATTTAGAGGGCAGCATATCAATGATATCGTTCGTTTAGACATGAAAGATGAT
    AATATGTTATTTTACAATTTTGATATATACGATACAAATGTTCTTTATAAAGAAATAGAC
    GAGGAAAAATTACTTAGAATTTTAGATGAAATAAGTAATACTGACAATTACAAAGCGCTA
    TTTAACATTATAAGTGAGAATCAAAAGAAATTTTGGAAATCAAATATTAAACCAATTGTA
    AGTGAATGTTCAGATGGTATAAATACAACCACATTTGATTTATATGCTTATGTAAATAAG
    TATATAAGTAATAAAATATTTGACTGTGATAATTATTTAATTACTAAAAATGAGGTTGTG
    GATTTCTATTTTAATCATGGTAGTGACTTTAATAATTTCAAGATGGGACAGACAGGCACA
    AAGTCCAAATTTAAGCAGGGAAATAAACTTAAAATACACGAATATATCATTGCAGTAACT
    TATGTAAATTTATTAAATCATTCATATATGAAATATATCAATGCTGAAAGTTACTATGAC
    CCTAGCAAAAAAATAATAAAAGGAATGAAAAATGATTATCATAAATTTACAGATTCATTC
    AGTGATTTTGTAGAAATGGTGGACGATATAACATGGAGAATCCGTGATTCGTTTGATTAT
    ATTGGAGGATTAAAAAATAAAGAAATTAGCGAAGATGAGAACGAATATATCGAACAATTA
    ATTCAATTTGTTATATTATCTAAATTCGGCTATATGAATGTGGAAAATCATTTTAATTAT
    ATTGAGAACTTAAATACACTTAATAACGAATTAACGACTATATTAAGAAGTGAATTCGCG
    CACATTTCAAATGATATGTATAATAATTTATTTGGTAATTTATTCGATGTTGTAAATACA
    TGGAAAAAAGATTATTCAAATAATTTTTATAATAATACTCAGAATACTATACCTACAGAA
    AAATTAGATATAATATCTTCATTTATAAAACAATATGATAAACCAATTGAACGAGACGAA
    CATGGCAAACACGTTAAAGCAAAAGTGTTTGAAGGTATAAGTGATTTTCATAAGCGTGTA
    AAAAAAGGATTTGATAATAATGATGTGCTATTGCATTTGAGATTGGAAATGAGTGTACAT
    GAAAATAAGTATGATTAA
    60
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    1578

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS00240 [old locus tag: SACOL0045 ]
  • symbol: SACOL_RS00240
  • description: hypothetical protein
  • length: 525
  • theoretical pI: 5.75043
  • theoretical MW: 62590.2
  • GRAVY: -0.567619

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0045
  • PFAM:
    TPR (CL0020) Xpo1; Exportin 1-like protein (PF08389; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010368
    • TAT(Tat/SPI): 0.000313
    • LIPO(Sec/SPII): 0.008906
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYDFLEYLHRYCIKSINNWEAVADISCKVERGNVSTGYYVKQDRIVIDDSDIPPIIKISGSYIAADILVTRYLDGMGEFIKVSKLDQSSYYEWFMFVEETRRIFRGTEIVYQFLKYLFTHTYEHKNEEKRIEKHMKNIIIDNQFRGQHINDIVRLDMKDDNMLFYNFDIYDTNVLYKEIDEEKLLRILDEISNTDNYKALFNIISENQKKFWKSNIKPIVSECSDGINTTTFDLYAYVNKYISNKIFDCDNYLITKNEVVDFYFNHGSDFNNFKMGQTGTKSKFKQGNKLKIHEYIIAVTYVNLLNHSYMKYINAESYYDPSKKIIKGMKNDYHKFTDSFSDFVEMVDDITWRIRDSFDYIGGLKNKEISEDENEYIEQLIQFVILSKFGYMNVENHFNYIENLNTLNNELTTILRSEFAHISNDMYNNLFGNLFDVVNTWKKDYSNNFYNNTQNTIPTEKLDIISSFIKQYDKPIERDEHGKHVKAKVFEGISDFHKRVKKGFDNNDVLLHLRLEMSVHENKYD

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0045
  • protein localization: see SACOL0045
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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