COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
• locus tag: SACOL_RS01785 [old locus tag: SACOL0355 ]
• pan locus tag^?:
• symbol: SACOL_RS01785
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS01785 [old locus tag: SACOL0355 ]
• symbol: SACOL_RS01785
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 370444..370752
• length: 309
• essential: unknown

⊟Accession numbers

• Location: NC_002951 (370444..370752) NCBI
• BioCyc: SACOL_RS01785 BioCyc
• MicrobesOnline: see SACOL0355

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
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  301
  
  ATGACGTTCACCTTATCAGATGAACAATATAAAAATCTTTGTACTAACTCTAACAAGTTA
  TTAGATAAACTTCACAAAGCATTAAAAGATCGTGAAGAGTACAAGAAGCAACGAGATGAG
  CTTATTGGGGATATAGCGAAGTTACGAGATTGTAACAAAGAACTGGAGAAGAAAGCAAGC
  GCATGGGATAGGTATTGCAAGAGCGTTGAAAAAGATTTAATAAACGAATTCGGTAACGAT
  GATGAAAGAGTTAAATTCGGAATGGAATTAAACAATAAAATTTTTATGGAGGATGACACA
  AATGAATAA
  60
  120
  180
  240
  300
  309
  

⊟Protein

⊟General

• locus tag: SACOL_RS01785 [old locus tag: SACOL0355 ]
• symbol: SACOL_RS01785
• description: hypothetical protein
• length: 102
• theoretical pI: 4.85853
• theoretical MW: 12143.6
• GRAVY: -1.16569

⊟Function

• TIGRFAM:
• TheSEED: see SACOL0355
• PFAM:
  no clan defined BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 17.7)
  Ax_dynein_light; Axonemal dynein light chain (PF10211; HMM-score: 15)
  LOH1CR12; Tumour suppressor protein (PF10158; HMM-score: 14.6)
  and 4 more
  Spectrin (CL0743) Spectrin_Anc-1; Nuclear anchorage protein 1, spectrin-like repeat (PF24611; HMM-score: 14.1)
  Peptidase_MA (CL0126) Peptidase_M3; Peptidase family M3 (PF01432; HMM-score: 12.8)
  no clan defined MCU; Mitochondrial calcium uniporter (PF04678; HMM-score: 12.5)
  TPR (CL0020) Importin_rep_6; Importin repeat 6 (PF18829; HMM-score: 11.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8815
  • Cytoplasmic Membrane Score: 0.0001
  • Cell wall & surface Score: 0.0027
  • Extracellular Score: 0.1156
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005526
  • TAT(Tat/SPI): 0.000572
  • LIPO(Sec/SPII): 0.001264
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446066853 NCBI
• RefSeq: WP_000144708 NCBI
• UniProt: see SACOL0355

⊟Protein sequence

• MTFTLSDEQYKNLCTNSNKLLDKLHKALKDREEYKKQRDELIGDIAKLRDCNKELEKKASAWDRYCKSVEKDLINEFGNDDERVKFGMELNNKIFMEDDTNE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications