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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01945 [old locus tag: SACOL0387 ]
  • pan locus tag?: SAUPAN001710000
  • symbol: SACOL_RS01945
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01945 [old locus tag: SACOL0387 ]
  • symbol: SACOL_RS01945
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 395313..395612
  • length: 300
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (395313..395612) NCBI
  • BioCyc: SACOL_RS01945 BioCyc
  • MicrobesOnline: see SACOL0387

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGTTTGGATTTACCAAACGACACGAACAAGATTGGCGTTTAACGCGATTAGAAGAAAAT
    GATAAGACTATGTTTGAAAAATTCGACAGAATAGAAGACAGTCTGAGAACGCAAGAAAAA
    ATTTATGACAAGTTAGATAGAAATTTCGAAGAACTAAGGCGTGACAAAGAAGAAGATGAA
    AAAAATAAAGAGAAAAATGCTAAAAATATTAGAGACATCAAGATGTGGATTCTAGGATTA
    ATAGGGACGATTCTAAGTACATTTGTTATAGCCTTGTTAAAAACTATTTTTGGCATTTAA
    60
    120
    180
    240
    300

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS01945 [old locus tag: SACOL0387 ]
  • symbol: SACOL_RS01945
  • description: hypothetical protein
  • length: 99
  • theoretical pI: 7.54141
  • theoretical MW: 12084.8
  • GRAVY: -0.844444

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism Other MutS2 family protein (TIGR01069; HMM-score: 8.8)
  • TheSEED: see SACOL0387
  • PFAM:
    no clan defined DUF2951; Protein of unknown function (DUF2951) (PF11166; HMM-score: 185.6)
    and 10 more
    XhlA; Haemolysin XhlA (PF10779; HMM-score: 23.3)
    TUNAR; TUNAR (PF21954; HMM-score: 16.2)
    MpPF26; M penetrans paralogue family 26 (PF07666; HMM-score: 16.1)
    Cyclin (CL0065) DUF3452; Domain of unknown function (DUF3452) (PF11934; HMM-score: 16.1)
    GOLD-like (CL0521) EMP24_GP25L; emp24/gp25L/p24 family/GOLD (PF01105; HMM-score: 14.7)
    no clan defined TelA; Toxic anion resistance protein (TelA) (PF05816; HMM-score: 14.7)
    YxiF; YxiF protein (PF24715; HMM-score: 14.2)
    DUF2207_C; Predicted membrane protein (DUF2207) C-terminal domain (PF20990; HMM-score: 14.1)
    DUF6118; Family of unknown function (DUF6118) (PF19613; HMM-score: 11.7)
    PRP1_N; PRP1 splicing factor, N-terminal (PF06424; HMM-score: 9.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0157
    • Cytoplasmic Membrane Score: 0.8363
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.1469
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002507
    • TAT(Tat/SPI): 0.001889
    • LIPO(Sec/SPII): 0.001011
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFGFTKRHEQDWRLTRLEENDKTMFEKFDRIEDSLRTQEKIYDKLDRNFEELRRDKEEDEKNKEKNAKNIRDIKMWILGLIGTILSTFVIALLKTIFGI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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