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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02760 [old locus tag: SACOL0540 ]
  • pan locus tag?: SAUPAN002235000
  • symbol: SACOL_RS02760
  • pan gene symbol?: yabJ
  • synonym:
  • product: RidA family protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS02760 [old locus tag: SACOL0540 ]
  • symbol: SACOL_RS02760
  • product: RidA family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 548804..549184
  • length: 381
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (548804..549184) NCBI
  • BioCyc: G1G4B-572 BioCyc
  • MicrobesOnline: see SACOL0540

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAATCATTAACACAACAAGATTACCGGAAGCACTTGGACCATATTCGCATGCAACA
    GTTGTGAATGGTATGGTTTATACTTCTGGTCAGATTCCATTGAATATTGATGGACATATC
    GTAAGCGCTGATGTTCAAGCACAGACAAAACAAGTTTTAGAAAATTTAAAGGTTGTTTTG
    GAAGAAGCAGGATCTGATTTGAATTCTGTTGCGAAAGCGACCATTTTCATTAAAGATATG
    AATGATTTCCAAAAAATAAATGAAGTGTATGGTCAATATTTTAATGAACACAAGCCAGCG
    CGTAGTTGTGTAGAGGTTGCGCGTTTGCCAAAAGATGTGAAAGTAGAAATTGAATTAGTA
    AGTAAAATTAAGGAATTATAA
    60
    120
    180
    240
    300
    360
    381

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS02760 [old locus tag: SACOL0540 ]
  • symbol: SACOL_RS02760
  • description: RidA family protein
  • length: 126
  • theoretical pI: 6.25457
  • theoretical MW: 13996
  • GRAVY: -0.139683

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Other reactive intermediate/imine deaminase (TIGR00004; HMM-score: 169.2)
    and 2 more
    pyrimidine utilization protein C (TIGR03610; HMM-score: 99)
    amanitin/phalloidin family toxin (TIGR04309; HMM-score: 11.8)
  • TheSEED: see SACOL0540
  • PFAM:
    YjgF-like (CL0534) Ribonuc_L-PSP; Endoribonuclease L-PSP (PF01042; HMM-score: 148.3)
    and 2 more
    no clan defined Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit (PF13890; HMM-score: 12.7)
    Eclosion; Eclosion hormone (PF04736; HMM-score: 12)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.03533
    • TAT(Tat/SPI): 0.001711
    • LIPO(Sec/SPII): 0.004131
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL

Experimental data[edit | edit source]

  • experimentally validated: see SACOL0540
  • protein localization: see SACOL0540
  • quantitative data / protein copy number per cell: see SACOL0540
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]