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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05285 [old locus tag: SACOL1036 ]
  • pan locus tag?: SAUPAN003215000
  • symbol: SACOL_RS05285
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS05285 [old locus tag: SACOL1036 ]
  • symbol: SACOL_RS05285
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1044994..1045596
  • length: 603
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1044994..1045596) NCBI
  • BioCyc: SACOL_RS05285 BioCyc
  • MicrobesOnline: see SACOL1036

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAATAAAATCTCGAAGGCTTTAACTTGGTTTATTATAAGTTTCATTATATTTCATCTC
    ATATTATTTATTATGTGGGGCGAACACCAAGAATACTGGTATTTATATACAGGTATAATG
    CTAATTGCTGGTATCAGTTATGTATTTTATCAAAGAGATATTGAATCTAATCGGTTGCTT
    ACATCAATTGGTGTTGGTATTATTACGGCAATTATTTTAATTATGCTTCAACTTTTATTC
    TCACTTATAACTTCTAATTTAAGTTATAGTTCATTAATTAAAGAATTAGCAAGAACAGGT
    GTCAATTGGAAGTGGCAAATGTTAGTAACTTTACTTTTTGTCATTCCATGTCACGAGTTA
    TATATGAGAACTGTTTTACAAAAAGAATTAACACATTTTTCAATACCGAAATGGGTAGCT
    ATATTAATAACTGCAATTTGTTCTAGTTCATTATTTATTTATTTAGATAATTGGTGGATA
    GTAACATTTATATTTGTTGCACAAGTGATATTATCATTAAGTTATGAGTATACTCGACGT
    ATAGCAACAACATCCGTTGCACAAATTGTAGCTATTATATTGTTATTAATTTTTAATGCT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    603

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS05285 [old locus tag: SACOL1036 ]
  • symbol: SACOL_RS05285
  • description: hypothetical protein
  • length: 200
  • theoretical pI: 8.98277
  • theoretical MW: 23288.8
  • GRAVY: 0.9475

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 10.5)
  • TheSEED: see SACOL1036
  • PFAM:
    Peptidase_U (CL0472) Abi; CAAX protease self-immunity (PF02517; HMM-score: 29.7)
    and 2 more
    no clan defined DUF2970; Protein of unknown function (DUF2970) (PF11174; HMM-score: 13.5)
    ATP_synthase (CL0255) ATP-synt_8; ATP synthase protein 8 (PF00895; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004444
    • TAT(Tat/SPI): 0.000192
    • LIPO(Sec/SPII): 0.00433
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKISKALTWFIISFIIFHLILFIMWGEHQEYWYLYTGIMLIAGISYVFYQRDIESNRLLTSIGVGIITAIILIMLQLLFSLITSNLSYSSLIKELARTGVNWKWQMLVTLLFVIPCHELYMRTVLQKELTHFSIPKWVAILITAICSSSLFIYLDNWWIVTFIFVAQVILSLSYEYTRRIATTSVAQIVAIILLLIFNA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL1036
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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