From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS06785 [old locus tag: SACOL1333 ]
  • pan locus tag?: SAUPAN003631000
  • symbol: SACOL_RS06785
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS06785 [old locus tag: SACOL1333 ]
  • symbol: SACOL_RS06785
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1349819..1350025
  • length: 207
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (1349819..1350025) NCBI
  • BioCyc: SACOL_RS06785 BioCyc
  • MicrobesOnline: see SACOL1333

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAATGAGATTGAAACTATTATAAGTGAAATAGAAAAGTTATTAACTAACAATACACCA
    TATAGTATTTCAAAAAACTCAGGTGTACCACGTCAAACAGTTACTGATTTAAAGGTAGGT
    AAAACTAAAATAAAAGAAGCTAAATTTAAAACGATAATCAAGTTATATGAATATCAAAGA
    ACATTAGAAAATAAAACAGAATGTTAA
    60
    120
    180
    207

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS06785 [old locus tag: SACOL1333 ]
  • symbol: SACOL_RS06785
  • description: hypothetical protein
  • length: 68
  • theoretical pI: 9.54573
  • theoretical MW: 7864.05
  • GRAVY: -0.658824

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1333
  • PFAM:
    no clan defined PGDH_C; Phosphogluconate dehydrogenase (decarboxylating) C-term (PF16896; HMM-score: 13.3)
    HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 12.9)
    no clan defined AbbA_antirepres; Antirepressor AbbA (PF14156; HMM-score: 12.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010249
    • TAT(Tat/SPI): 0.001045
    • LIPO(Sec/SPII): 0.001955
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNEIETIISEIEKLLTNNTPYSISKNSGVPRQTVTDLKVGKTKIKEAKFKTIIKLYEYQRTLENKTEC

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL1333
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]