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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS09355 [old locus tag: SACOL1825 ]
- pan locus tag?: SAUPAN004467000
- symbol: SACOL_RS09355
- pan gene symbol?: —
- synonym:
- product: autolysin
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS09355 [old locus tag: SACOL1825 ]
- symbol: SACOL_RS09355
- product: autolysin
- replicon: chromosome
- strand: -
- coordinates: 1880780..1881634
- length: 855
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGAATAAACACAAGAAAGGTTCTATTTTTGGAATAATAGGACTTGTTGTCATATTTGCT
GTTGTCTCATTTTTATTTTTCTCAATGATATCCGATCAGATATTTTTCAAACATGTTAAA
TCCGACATTAAGATTGAAAAGTTAAATGTTACATTAAACGATGCAGCAAAGAAACAAATA
AATAATTATACGAGTCAACAGGTATCAAATAAAAAGAATGATGCATGGAGAGATGCATCT
GCAACTGAAATTAAAAGTGCAATGGATAGCGGTACTTTTATCGATAATGAAAAGCAAAAA
TATCAATTTTTAGATTTATCAAAGTATCAAGGGATTGATAAAAATAGAATTAAACGTATG
TTAGTAGATAGACCAACGTTATTGAAACATACGGATGATTTCTTAAAAGCTGCTAAAGAT
AAGCACGTTAACGAAGTTTATTTAATTTCACATGCATTATTAGAAACTGGCGCAGTTAAA
AGTGAATTAGCTAATGGAGTCGAAATTGATGGCAAAAAGTACTACAATTTCTATGGAGTA
GGAGCCCTTGATAAAGACCCAATTAAAACAGGTGCAGAATATGCTAAAAAGCATGGTTGG
GATACACCTGAAAAAGCTATTTCAGGCGGTGCTGATTTCATTCATAAGCACTTCTTATCA
AGCACAGATCAAAATACATTGTATAGTATGAGATGGAATCCAAAAAATCCAGGAGAACAT
CAATATGCTACAGATATTAAGTGGGCAGAAAGTAATGCAACAATTATCGCTGACTTTTAT
AAGAACATGAAGACTGAAGGAAAATACTTCAAATACTTTGTGTATAAAGATGACAGTAAA
CATTTGAATAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS09355 [old locus tag: SACOL1825 ]
- symbol: SACOL_RS09355
- description: autolysin
- length: 284
- theoretical pI: 9.78873
- theoretical MW: 32505.8
- GRAVY: -0.595423
⊟Function[edit | edit source]
- TIGRFAM: flagellar rod assembly protein/muramidase FlgJ (TIGR02541; HMM-score: 14.8)Protein synthesis Translation factors selenocysteine-specific translation elongation factor (TIGR00475; HMM-score: 13.5)
- TheSEED: see SACOL1825
- PFAM: Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 48.4)and 2 moreno clan defined Pox_A3L; Poxvirus A3L Protein (PF05288; HMM-score: 14.1)Peptidase_MA (CL0126) Peptidase_M56; BlaR1 peptidase M56 (PF05569; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.21463
- TAT(Tat/SPI): 0.00093
- LIPO(Sec/SPII): 0.01466
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFVYKDDSKHLNK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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