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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10390 [old locus tag: SACOL1988 ]
  • pan locus tag?: SAUPAN004973000
  • symbol: SACOL_RS10390
  • pan gene symbol?: —
  • synonym:
  • product: choloylglycine hydrolase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS10390 [old locus tag: SACOL1988 ]
  • symbol: SACOL_RS10390
  • product: choloylglycine hydrolase
  • replicon: chromosome
  • strand: +
  • coordinates: 2051301..2052341
  • length: 1041
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2051301..2052341) NCBI
  • BioCyc: SACOL_RS10390 BioCyc
  • MicrobesOnline: see SACOL1988

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGCAACAAGTGACATCAGATATCATGACTTTTAGAGGTTCACATTTCGAGTTAGGTGTT
    AAAACTGGTAAATGGCTTCAACAAACACCTCTTCTAAAAAATCGAGAAAAAGAATGGAAA
    AAACGTGTCCCACGTTTCGATATAGATGTAAATGAAACTTATCAAATATTCCAAACATAC
    GCACCTCAAATATGGGAAGAATTAATGGGACTACAAAGTATACTCAAAATGCCAACACGC
    CAAATTATTTTAAACTTTGGACATTATCGTTTTACCGATTTAAAAGAAAGTGGTTGCACG
    GTCTTTCAAGGCAAAGACTTCATGGTTAGAAATTATGATTACCACCCTGCAACTTATGAT
    GGTCGCTACTTACTTTATCAACCTACAGATAGCGGTTTAGCTCAAATTGGTCCTGTATCA
    AGGGTAACTGGAAGAATGGATGGTATGAATGAGTCAGGATTAACTATGGGCTATAACTTT
    ATGCACCGGAAGAAACCAGCAAATGGTTTTGTATGTTATATGATTGGTCGTCTAATTCTT
    GAAAATTGCCGAAATGTAACAGAAGCAATCCAATTATTGAAAGAAATACCACACAGAAGC
    TCATTTAGCTACATACTGATGGACAAATCATTGAACCATGCAATTGTTGAAGTGACACCG
    AGATCAATAGATGTTCGTTATGATAATATATGTACAAATCATTTTGAAATATTAACACAT
    GAAAATCGTAATTATACAAAAGAATCTAAAGAAAGACTGGCGCGTACCATTTCACAAACT
    AATGATAATTTAGATATGACTACAGCATTTAAGTTATTCAATAATCCTCAGTATGAAATT
    TACAGTAAACTATTCAAAAGCTGGTCTGGCACCATCCATACATCAATGTATCAACCTGAA
    ACATTAACTGCATATTTTACATTGGGAGAAAATGCGCCACCAGAAATAATAGATTTCAAA
    TCATGGTTAGATGGTCAAGACCTTAATATCACTCACTTTACTGGCAATATAGATACCGAC
    TTAACTTTTGCCAACAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1041


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS10390 [old locus tag: SACOL1988 ]
  • symbol: SACOL_RS10390
  • description: choloylglycine hydrolase
  • length: 346
  • theoretical pI: 7.64986
  • theoretical MW: 40354.6
  • GRAVY: -0.525723

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1988
  • PFAM:
    NTN (CL0052) AAT; Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase (PF03417; HMM-score: 267.5)
    and 4 more
    CBAH; Linear amide C-N hydrolases, choloylglycine hydrolase family (PF02275; HMM-score: 24.3)
    HNOX-like (CL0210) HNOB; Haem-NO-binding (PF07700; HMM-score: 15)
    no clan defined YcbB; YcbB domain (PF08664; HMM-score: 14.2)
    DUF6735; Family of unknown function (DUF6735) (PF20509; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8853
    • Cytoplasmic Membrane Score: 0.1024
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0121
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002181
    • TAT(Tat/SPI): 0.000228
    • LIPO(Sec/SPII): 0.000544
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQQVTSDIMTFRGSHFELGVKTGKWLQQTPLLKNREKEWKKRVPRFDIDVNETYQIFQTYAPQIWEELMGLQSILKMPTRQIILNFGHYRFTDLKESGCTVFQGKDFMVRNYDYHPATYDGRYLLYQPTDSGLAQIGPVSRVTGRMDGMNESGLTMGYNFMHRKKPANGFVCYMIGRLILENCRNVTEAIQLLKEIPHRSSFSYILMDKSLNHAIVEVTPRSIDVRYDNICTNHFEILTHENRNYTKESKERLARTISQTNDNLDMTTAFKLFNNPQYEIYSKLFKSWSGTIHTSMYQPETLTAYFTLGENAPPEIIDFKSWLDGQDLNITHFTGNIDTDLTFANK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1988
  • protein localization: see SACOL1988
  • quantitative data / protein copy number per cell: see SACOL1988
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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