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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12365 [old locus tag: SACOL2354 ]
  • pan locus tag?: SAUPAN005865000
  • symbol: SACOL_RS12365
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS12365 [old locus tag: SACOL2354 ]
  • symbol: SACOL_RS12365
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2413428..2414396
  • length: 969
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2413428..2414396) NCBI
  • BioCyc: SACOL_RS12365 BioCyc
  • MicrobesOnline: see SACOL2354

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTATTGAATTTATTATTAATATTTATACTTATCGTTATTTGTCCGTTAATTTTCAAC
    TATACTCTGACGTTAAATTTAACATGCTACATCTTAGTTGTCATATCGATATTTTTGTCA
    CTCATCTATAGCATCATGACCTATACTTTCCCTTGGTCTATGTTTGTAACATTTATAATA
    ATCAGTATTATCATGCTATTCAAACATAGATATTTATTTTCTCATACTTCTAGTCGCTTA
    TTTATTAAAAAATTATTATCTTTTTCATATAAATTTGTACTCTACACATCAGCACTTCTA
    TTTATAAGTACGATTCAGTCACCTATTGTGAAAGGTTTGTCTATGTGGTTAGCTATATTA
    TGTCTTTCCCTGTTACTAACCTTTATTTGTTATCTCGTTTGGACAGTATCATATAGACAT
    AGATCATACAACAAAGAAGTTGATATCATAATTGTGTTAGGTGCTGGTATTTTTACCGAA
    TTTGTCACACCAATGCTTGCAGCGCGTTTAGATCGTGCACTTGATATCTATCAACAACAA
    GCATCAGCAACAAAGATCATTGTATCTGGCGGACAAGGACCAGACGAACCAATTTCTGAA
    GCTTTAGCTATGCAACGTTATTTGATTGCACATGGTGTTGATAAAACAGATATACTAATG
    GAATCTCACTCTATAAATACATACACAAACTTTTTATATTCTAAACAAATCATCAACAAT
    TTGTATCATGAAGCAGTTAAAATTGTTTGTGTAACAAGTCAGTTTCATGTATTGCGCGCC
    TTACGACTAGCCCAAAAATTAGGTTTATCTATCGATGGTGTCGGAAGTCATACACCATAT
    CACTTTTTCTTACATGTGCTCATCAAAGATTATCTAGGCGTAATGTATCAGTATAGATTG
    TTATTAACGTTATATTGTTCAAGTAGTTGGTTTATATGTCTTTACGCCGCTTTTATTTAT
    AATAGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    969


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS12365 [old locus tag: SACOL2354 ]
  • symbol: SACOL_RS12365
  • description: membrane protein
  • length: 322
  • theoretical pI: 9.02542
  • theoretical MW: 37067
  • GRAVY: 0.77764

⊟Function[edit | edit source]

  • TIGRFAM:
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 14)
    and 1 more
    undecaprenyl-phosphate glucose phosphotransferase (TIGR03023; EC 2.7.8.-; HMM-score: 10)
  • TheSEED: see SACOL2354
  • PFAM:
    no clan defined DUF218; DUF218 domain (PF02698; HMM-score: 112.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0064
    • Cytoplasmic Membrane Score: 0.9823
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0113
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002252
    • TAT(Tat/SPI): 0.000226
    • LIPO(Sec/SPII): 0.17246
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFIIISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAILCLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINNLYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRLLLTLYCSSSWFICLYAAFIYNS

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2354
  • protein localization: see SACOL2354
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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