From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13205 [old locus tag: SACOL2522 ]
  • pan locus tag?: SAUPAN006142000
  • symbol: SACOL_RS13205
  • pan gene symbol?: —
  • synonym:
  • product: DedA family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13205 [old locus tag: SACOL2522 ]
  • symbol: SACOL_RS13205
  • product: DedA family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2583382..2583993
  • length: 612
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2583382..2583993) NCBI
  • BioCyc: SACOL_RS13205 BioCyc
  • MicrobesOnline: see SACOL2522

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAACAAATTATCACTGAATTTATTAGCCGTTTTGGGTATGCAGCCATTTTTATATTA
    ATTTTATTAGAAAATGTACTACCTATCGTACCATCGGAAATTATTCTGACATTTGCTGGT
    CTTATGTCTGTTAAATCACATTTATCAATTTTAACTTTATTTATTATTGCAACTATCGCA
    TCGTTTATAGGGCTGTTAATTTTATATTATATCTGCCGTTTGATTTCAGAAGAACGTCTA
    TATCGTTTTATTGATCGACACGGTAAGTGGATTAAATTGAAAAGTAAGGATTTAAAGCGA
    GCAAATGATTGGTTTAAAAAGTATGGCGTATGGGCTGTATTTATCTGTCGTTTCATACCT
    GTATTACGTGTATTGATTACCATTCCAGCTGGTGTAAACCGCATGAATGTTGTGACATTT
    ACCGTTATTTCATTAATAGGTACTACAATCTGGAATTTCGGTTTAATTTTACTAGGACGC
    ACTTTGAGCGATAGCTTTGGTATGTTGATGACTGGTCTTCATACATATTCACGTATTATG
    TATGTTGTCATCATTATCGCAGTCATTTACTTTGCTATACGTTACATTGGCAAACGTAAG
    AGAGTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    612

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13205 [old locus tag: SACOL2522 ]
  • symbol: SACOL_RS13205
  • description: DedA family protein
  • length: 203
  • theoretical pI: 10.6743
  • theoretical MW: 23432.3
  • GRAVY: 0.830542

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL2522
  • PFAM:
    no clan defined SNARE_assoc; SNARE associated Golgi protein (PF09335; HMM-score: 79.2)
    and 1 more
    Ac76; Orf76 (Ac76) (PF05814; HMM-score: 6.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004252
    • TAT(Tat/SPI): 0.000214
    • LIPO(Sec/SPII): 0.021635
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEQIITEFISRFGYAAIFILILLENVLPIVPSEIILTFAGLMSVKSHLSILTLFIIATIASFIGLLILYYICRLISEERLYRFIDRHGKWIKLKSKDLKRANDWFKKYGVWAVFICRFIPVLRVLITIPAGVNRMNVVTFTVISLIGTTIWNFGLILLGRTLSDSFGMLMTGLHTYSRIMYVVIIIAVIYFAIRYIGKRKRVK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2522
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS13205&oldid=94330"