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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13615 [old locus tag: SACOL2601 ]
  • pan locus tag?: SAUPAN006264000
  • symbol: SACOL_RS13615
  • pan gene symbol?: —
  • synonym:
  • product: type II secretion protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13615 [old locus tag: SACOL2601 ]
  • symbol: SACOL_RS13615
  • product: type II secretion protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2662178..2662474
  • length: 297
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2662178..2662474) NCBI
  • BioCyc: SACOL_RS13615 BioCyc
  • MicrobesOnline: see SACOL2601

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGGAAACAATAGGAAGCATTATTTATTTAAAAGAAGGTTCGCAAAAGTTAATGATTATT
    AATAGAGGACCAATTGTAGAAATTGAAAATCAAAAGTATATGTTTGACTATTCTGCATGT
    AAATATCCGATTGGTGTTGTAGAAGATGAAATTTATTATTTTAACGAGGAAAATATAGAT
    TCAGTTATTTTTAAAGGTTATTCTGATCAAGATGAGGTTAGATTTCAAGAGTTGTTTGAA
    AATATGAAACAAAATTTGGATAGTGAAATACAACGTGGAGAAGTTACACAACAATAA
    60
    120
    180
    240
    297

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13615 [old locus tag: SACOL2601 ]
  • symbol: SACOL_RS13615
  • description: type II secretion protein
  • length: 98
  • theoretical pI: 4.01648
  • theoretical MW: 11577.9
  • GRAVY: -0.540816

⊟Function[edit | edit source]

  • TIGRFAM:
    mobile rSAM pair MarR family regulator (TIGR04472; HMM-score: 14.3)
  • TheSEED: see SACOL2601
  • PFAM:
    no clan defined DUF4176; Domain of unknown function (DUF4176) (PF13780; HMM-score: 84.3)
    and 3 more
    HBS1_N; HBS1 N-terminus (PF08938; HMM-score: 15.3)
    GBD (CL0202) CBM_26; C-terminal carbohydrate-binding module (PF16824; HMM-score: 13)
    Peptidase_MH (CL0035) DUF4910; Domain of unknown function (DUF4910) (PF16254; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006296
    • TAT(Tat/SPI): 0.000112
    • LIPO(Sec/SPII): 0.001784
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • METIGSIIYLKEGSQKLMIINRGPIVEIENQKYMFDYSACKYPIGVVEDEIYYFNEENIDSVIFKGYSDQDEVRFQELFENMKQNLDSEIQRGEVTQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2601
  • protein localization: see SACOL2601
  • quantitative data / protein copy number per cell: see SACOL2601
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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