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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS14845 [old locus tag: SACOL2015 ]
- pan locus tag?: SAUPAN005256000
- symbol: SACOL_RS14845
- pan gene symbol?: —
- synonym:
- product: site-specific integrase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: SACOL_RS14845 [old locus tag: SACOL2015 ]
- symbol: SACOL_RS14845
- product: site-specific integrase
- replicon: chromosome
- strand: +
- coordinates: <2075383..2075929
- length: 547
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481
541GCCCCGTTAACTAGCTTTGAAGTCTTTAGCACACTTGCATATACCGGCTGTCGTGCTGGC
GAGATACTAGCATTGAAGTGGTCTGATATTGATTTTGAAAACAACACGATTAGTATTACT
AAAACATATTACAATCCAAATAATAACAAGAAGAAATATCAGATACTTCCCCCTAAAACT
GAAAGTTCTATCGGTAAGATTTCCGTTGACCCAAATGTAATAAAGGTGTTGCGTGATTAT
AAGATAAACGTTCAAAATAATTGGAAAAACGAATTATATAATGATAACCATTGTAATGAA
AAAACTATCAATGTGGATACAAACCATTATGTCACGTACCAGCATACTCAAAAATATCTC
TACGCACTCATTCAGATACACACATTGCGCATTGCTCATAGAATCAGGTGTACACATTAA
AGAAATACAAGAACGATTACGGCATAAAGATATCAATACCACTATGAATATCTATGCTAA
AATCACAAATTCATACAAAAAAGACGCCTCCCATAAGTTTAGTCACCAAATGGAAGACGT
CTCGTAA60
120
180
240
300
360
420
480
540
547
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS14845 [old locus tag: SACOL2015 ]
- symbol: SACOL_RS14845
- description: site-specific integrase
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- LocateP:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]