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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_01525
- pan locus tag?:
- symbol: SAOUHSC_01525
- pan gene symbol?: —
- synonym:
- product: phage tail tape meausure protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_01525
- symbol: SAOUHSC_01525
- product: phage tail tape meausure protein
- replicon: chromosome
- strand: -
- coordinates: 1473307..1479507
- length: 6201
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3920628 NCBI
- RefSeq: YP_500042 NCBI
- BioCyc: G1I0R-1416 BioCyc
- MicrobesOnline: 1289956 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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6181ATGAATGAAAAAGTAGAAGGCATGACCTTGGAGCTGAAATTAGACCATTTAGGTGTCCAA
GAAGGCATGAAAGGTTTAAAGCGACAATTAGGTGTTGTTAATAGTGAAATGAAAGCTAAT
CTGTCAGCATTTGATAAGTCTGAAAAATCAATGGAAAAATATCAGGCGAGAATTAAGGGG
TTAAATGATAGGCTTAAAGTTCAAAAAAAGATGTATTCTCAAGTAGAAGATGAGCTTAAA
CAAGTTAACGCTAATTACCAAAAAGCTAAATCCAGTGTAAAAGATGTTGAGAAAGCATAT
TTAAAGTTAGTAGAAGCCAATAAAAAAGAAAAATTAGCTCTTGATAAATCTAAAGAAGCC
TTAAAATCATCGAATACAGAACTTAAAAAAGCTGAAAATCAATATAAACGTACAAATCAA
CGTAAACAAGATGCGTATCAAAAACTTAAACAGTTGAGAGATGCAGAACAAAAGCTTAAG
AATAGTAACCAAGCTACTACTGCACAACTAAAAAGAGCAAGTGACGCAGTACAGAAGCAG
TCCGCTAAGCATAAAGCACTTGTTGAACAATATAAACAAGAAGGCAATCAAGTTCAAAAA
CTAAAAGTGCAAAATGACAATCTTTCAAAATCAAATGATAAAATTGAAAGTTCTTACGCT
AAAACTAATACTAAATTAAAGCAAACAGAAAAAGAATTTAATGATTTAAACAATACTATT
AAGAATCATAGCGCTAATGTCGCAAAAGCTGAAACAGCTGTTAATAAAGAAAAAGCTGCT
TTAAATAATTTGGAGCGTTCAATAGATAAAGCTTCATCCGAAATGAAGACTTTTAACAAA
GAACAAATGATAGCTCAAAGTCATTTCGGTAAACTTGCAAGTCAAGCGGATGTCATGTCA
AAGAAATTTAGTTCTATTGGAGACAAAATGACTTCCCTGGGACGTACAATGACGATGGGC
GTATCTACACCGATTACTTTAGGTTTAGGTGCAGCATTAAAAACGAGTGCAGACTTTGAA
GGGCAAATGTCTCGAGTTGGAGCGATTGCACAAGCAAGCAGTAAAGACTTAAAAAGCATG
TCTAATCAAGCGGTTGACTTAGGAGCTAAAACAAGTAAAAGTGCTAACGAAGTTGCTAAA
GGTATGGAAGAATTGGCAGCTTTAGGCTTTAATGCCAAACAAACAATGGAGGCTATGCCA
GGTGTTATCAGCGCAGCAGAAGCAAGTGGTGCAGAAATGGCTACAACTGCAACTGTAATG
GCTTCAGCGATTAACTCTTTCGGTTTAAAAGCATCTGATGCAAATCATGTTGCTGATTTA
CTTGCGAGATCAGCAAATGATAGTGCTGCAGATATTCAATATATGGGAGATGCATTAAAA
TATGCAGGTACTCCAGCAAAAGCATTAGGAGTTTCAATAGAGGACACTTCTGCAGCAATT
GAAGTTTTATCTAACTCAGGTTTAGAGGGGTCTCAAGCAGGTACTGCATTAAGAGCTTCG
TTTATTAGGCTAGCTAATCCAAGTAAAAGTACAGCTAAGGAAATGAAAAAATTAGGTATT
CATTTGTCTGATGCTAAAGGTGAGTTTGTTGGAATGGGCGAATTGATTAGACAGTTCCAA
GATAACATGAAAGGCATGACGAGAGAACAAAAATTAGCAACAGTGGCTACAATAGTTGGC
ACTGAAGCAGCAAGTGGATTTTTAGCCTTGATTGAAGCGGGTCCAGATAAAATTAATAGC
TATAGCAAATCATTGAAGAACTCTAATGGTGAAAGTAAAAAAGCAGCTGATTTGATGAAA
GATAACCTCAAAGGTGCTCTGGAACAATTAGGTGGCGCTTTTGAATCGTTAGCAATTGAA
GTTGGTAAAGATTTAACGCCTATGATTAGAGCAGGTGCGGAAGGATTAACAAAATTAGTT
GATGGATTTACACATCTTCCTGGTTGGGTTAGAAAGGCTTCGGTAGGCTTAGCAATTTTT
GGTGCATCTATTGGTCCTGCTGTTCTTGCTGGTGGCTTATTAATACGTGCAGTTGGGAGC
GCGGCTAAAGGCTATGCATCATTAAATAGACGCATTGCTGAAAATACAATTCTTTCTAAT
ACCAATTCAAAAGCAATGAAATCTTTAGGTCTTCAAACATTATTTCTTGGTTCTACAACA
GGAAAAACGTCAAAAGGCTTTAAAGGATTAGCCGGAGCTATGTTGTTTAATTTAAAACCT
ATAAATGTTTTGAAAAATTCTGCAAAGCTAGCAATTTTACCGTTCAAACTTTTGAAAAAC
GGTTTAGGATTAGCCGCAAAATCCTTATTTGCAGTAAGTGGAGGCGCAAGATTTGCTGGT
GTAGCCTTAAAGTTTTTAACAGGACCTATAGGTGCTACAATAACTGCTATTACAATTGCA
TATAAAGTTTTTAAAACCGCATATGATCGTGTGGAATGGTTCAGAAACGGTATTAACGGT
TTAGGAGAAACTATAAAGTTTTTTGGTGGCAAAATTATTGGCGGTGCTGTTAGGAAGCTA
GGAGAGTTTAAAAATTATCTTGGAAGTATAGGCAAAAGCTTCAAAGAAAAGTTTTCAAAG
GATATGAAAGATGGTTATAAATCTTTGAGTGACGATGACCTTCTGAAAGTAGGAGTCAAC
AAGTTTAAAGGATTTATGCAAACCATGGGCACAGCTTCTAAAAAAGCATCTGATACTGTA
AAAGTGTTGGGGAAAGGTGTTTCAAAAGAAACAGAAAAAGCTTTAGAAAAATACGTACAC
TATTCTGAAGAGAACAACAGAATCATGGAAAAAGTACGTTTAAACTCGGGTCAAATAACA
GAAGACAAAGCAAAAAAACTTTTGAAAATTGAAGCGGATTTATCTAATAACCTTATAGCT
GAAATAGAAAAAAGAAATAAAAAGGAACTCGAAAAAACTCAAGAACTTATTGATAAGTAT
AGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTAGAACTAAAGAAAAAAATGAC
TTGCGAATTAAAAAAGAGCAAGAACTCAATCAGAAAATCAAAGAATTGAAAGAAAAAGCT
TTAAGTGATGGTCAGATTTCAGAAAATGAAAGAAAAGAAATTGAAAAGCTTGAAAATCAA
AGACGTGACATCACTGTTAAAGAATTGAGTAAGACTGAAAAAGAGCAAGAGCGTATTTTA
GTAAGAATGCAAAGAAACAGAAATGCTTATTCAATAGACGAAGCGAGCAAAGCAATTAAA
GAAGCAGAAAAAGCAAGAAAAGCAAGAAAAAAAGAAGTGGATAAGCAGTATGAAGATGAT
GTCATTGCTATAAAAAATAACGTCAACCTTTCTAAGTCTGAAAAAGATAAATTGTTAGCT
ATTGCTGATCAAAGACATAAGGATGAAGTAAGAAAGGCAAAATCTAAAAAAGATGCTGTA
GTAGACGTTGTTAAAAAGCAAAATAAAGATATTGATAAAGAAATGGATTTATCCAGTGGA
CGTGTATATAAAAATACTGAAAAGTGGTGGAATGGTCTTAAAAGTTGGTGGTCTAACTTT
AGAGAAGACCAAAAGAAGAAAAGTGATAAATACGCTAAAGAACAAGAAGAAACAGCTCGT
AGAAACAGAGAAAATATAAAGAAATGGTTTGGAAATGCTTGGGACGGCGTAAAAACTAAA
ACTGGTGAAGCCTTTAGTAAAATGGGCAGAAATGCTAATCATTTTGGCGGCGAAATGAAA
AAAATGTGGAGTGGAATCAAAGGAATTCCAAGCAAATTAAGTTCAAGTTGGAGCTCAGCC
AAAAGTTCTGTAGGATATCACACTAAGGCTATAGCTAATAGTACTGGTAAATGGTTTGGA
AAAGCTTGGCAATCTGTTAAATCGACTACAGGAAGTATTTACAATCAAACTAAGCAAAAG
TATTCAGATGCCTCAGATAAAGCTTGGGCGCATTCAAAATCTATTTGGAGAGGCACATCA
AAATGGTTTAGCAACGCATATAAAAGTGCAAAGGGTTGGCTAATAGATATGGCTAATAAA
TCGCGCTCGAAATGGGATAATATTTCTAGTACAGCATGGTCGAATGCAAAATCCGTTTGG
AAAGGAACATCGAAATGGTTTAGTAACTCATACAAATCTTTAAAAGGTTGGACTGGGGAT
ATGTATTCAAGAGCCCACGATCGTTTTGATGCAATTTCAAGTTCGGCATGGTCTAACGCT
AAATCAGTATTTAATGGTTTTAGAAAATGGCTATCAAAAACATATGATTGGATTAGAGAT
ATTGGTAAAGACATGGGAAGAGCTGCGGCTGATTTAGGTAAAAATGTTGCTAATAAAGCT
ATTGGCGGTTTGAATAGCATGATTGGCGGTATTAATAAAATATCTAAAGCCATTACTGAT
AAAAATCTCATCAAGCCAATACCTACATTGTCTACTGGTACTTTAGCAGGAAAGGGTGTA
GCTACCGATAATTCAGGAGCATTAACGCAACCGACATTTGCTGTATTAAATGATAGAGGT
TCTGGAAACGCCCCAGGTGGTGGAGTTCAAGAAATAATTCACAGGGCTGACGGAACATTC
CATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGAGATAGTGTAATAAAT
GCCAATGACACTCTGAAGTTACAGCGGATGGGTGTTTTGCCAAAATTCCATGGTGGTACG
AAAAAGAAAAAATGGATGGAACAAGTTACTGAAAATCTTGGTAAAAAAGCAGGGGACTTC
GGTTCTAAAGCTAAAAACACAGCTCATAATATCAAAAAAGGTGCAGAAGAAATGGTTGAA
GCGGCAGGCGATAAAATCAAAGATGGTGCATCTTGGTTAGGCGATAAAATCGGCGATGTG
TGGGATTATGTACAACATCCAGGGAAACTAGTAAATAAAGTAATGTCAGGTTTAAATATT
AATTTTGGAGGCGGAGCTAACGCTACAGTAAAAATTGCTAAAGGCGCGTACTCATTGCTC
AAAAAGAAATTAGTAGACAAAGTAAAATCGTGGTTTGAAGATTTTGGTGGCGGAGGCGAT
GGAAGCTATCTATTTGACCATCCAATTTGGCAAAGGTTTGGGAGTTACACAGGTGGACTT
AACTTTAATGGCGGTCGTCACTATGGTATCGACTTTGGTATGCCTACAGGAACGAACATT
TATGCTGTTAAAGGCGGTATAGCTGATAAAGTATGGACTGATTACGGTGGCGGTAATTCT
ATACAAATTAAGACCGGTGCTAACGAATGGAACTGGTATATGCATTTATCTAAGCAATTA
GCAAGACAAGGCCAACGTATTAAAGCTGGTCAACTGATAGGGAAATCAGGTGCTACAGGT
AATTTCGTTAGAGGAGCACACTTACATTTCCAATTGATGCAAGGGTCGCATCCAGGGAAT
GATACAGCTAAAGATCCAGAAAAATGGTTGAAGTCACTTAAAGGTAGTGGCGTTCGAAGT
GGTTCAGGTGTTAATAAGGCTGCATCTGCTTGGGCAGGCGATATACGTCGTGCAGCAAAA
CGAATGGGTGTTAATGTTACTTCGGCTGACGTAGGAAATATCATTAGCTTGATTCAACAC
GAATCAGGAGGAAATGCAGGTATAACTCAATCTAGTTCGCTTAGAGACATCAACGTTTTA
CAGGGCAATCCAGCAAAAGGATTGCTTCAATATATCCCACAAACATTTAGACATTATGCT
GTTAGAGGTCACAACAATATATATAGTGGTTACGATCAGTTATTAGCGTTCTTTAACAAC
AGATATTGGCGCTCACAGTTTAACCCAAGAGGTGGTTGGTCTCCAAGTGGTCCAAGAAGA
TATGCGAATGGTGGTTTGATTACAAAGCATCAACTTGCTGAAGTGGGTGAAGGAGATAAA
CAGGAGATGGTTATCCCTTTAACTAGACGTAAACGAGCAATTCAATTAACTGAACAGGTT
ATGCGCATCATCGGTATGGATGGCAAGCCAAATAACATCACTGTAAATAATGATACTTCT
ACAGTTGAAAAATTGTTGAAACAAATTGTTATGTTAAGTGATAAAGGAAATAAATTAACA
GATGCGTTGATTCAAACTGTTTCTTCTCAGGATAATAACTTAGGTTCTAATGATGCAATT
AGAGGTTTAGAAAAAATATTGTCAAAACAAAGTGGGCATAGAGCAAATGCAAATAATTAT
ATGGGAGGTTTGACTAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_01525
- symbol: SAOUHSC_01525
- description: phage tail tape meausure protein
- length: 2066
- theoretical pI: 10.4972
- theoretical MW: 226063
- GRAVY: -0.605808
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 370.6)and 4 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 41.3)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 41.3)Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 40.1)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 40.1)
- TheSEED :
- Phage tail, tail length tape-measure protein
- PFAM: no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 161.5)and 1 moreHybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 74.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.02
- Extracellular Score: 9.98
- Internal Helices: 2
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005056
- TAT(Tat/SPI): 0.0011
- LIPO(Sec/SPII): 0.000981
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNEKVEGMTLELKLDHLGVQEGMKGLKRQLGVVNSEMKANLSAFDKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDELKQVNANYQKAKSSVKDVEKAYLKLVEANKKEKLALDKSKEALKSSNTELKKAENQYKRTNQRKQDAYQKLKQLRDAEQKLKNSNQATTAQLKRASDAVQKQSAKHKALVEQYKQEGNQVQKLKVQNDNLSKSNDKIESSYAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMKTFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALKTSADFEGQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAALGFNAKQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDSAADIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSGLEGSQAGTALRASFIRLANPSKSTAKEMKKLGIHLSDAKGEFVGMGELIRQFQDNMKGMTREQKLATVATIVGTEAASGFLALIEAGPDKINSYSKSLKNSNGESKKAADLMKDNLKGALEQLGGAFESLAIEVGKDLTPMIRAGAEGLTKLVDGFTHLPGWVRKASVGLAIFGASIGPAVLAGGLLIRAVGSAAKGYASLNRRIAENTILSNTNSKAMKSLGLQTLFLGSTTGKTSKGFKGLAGAMLFNLKPINVLKNSAKLAILPFKLLKNGLGLAAKSLFAVSGGARFAGVALKFLTGPIGATITAITIAYKVFKTAYDRVEWFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKEKFSKDMKDGYKSLSDDDLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETEKALEKYVHYSEENNRIMEKVRLNSGQITEDKAKKLLKIEADLSNNLIAEIEKRNKKELEKTQELIDKYSAFDEQEKQNILTRTKEKNDLRIKKEQELNQKIKELKEKALSDGQISENERKEIEKLENQRRDITVKELSKTEKEQERILVRMQRNRNAYSIDEASKAIKEAEKARKARKKEVDKQYEDDVIAIKNNVNLSKSEKDKLLAIADQRHKDEVRKAKSKKDAVVDVVKKQNKDIDKEMDLSSGRVYKNTEKWWNGLKSWWSNFREDQKKKSDKYAKEQEETARRNRENIKKWFGNAWDGVKTKTGEAFSKMGRNANHFGGEMKKMWSGIKGIPSKLSSSWSSAKSSVGYHTKAIANSTGKWFGKAWQSVKSTTGSIYNQTKQKYSDASDKAWAHSKSIWRGTSKWFSNAYKSAKGWLIDMANKSRSKWDNISSTAWSNAKSVWKGTSKWFSNSYKSLKGWTGDMYSRAHDRFDAISSSAWSNAKSVFNGFRKWLSKTYDWIRDIGKDMGRAAADLGKNVANKAIGGLNSMIGGINKISKAITDKNLIKPIPTLSTGTLAGKGVATDNSGALTQPTFAVLNDRGSGNAPGGGVQEIIHRADGTFHAPQGRDVVVPLGVGDSVINANDTLKLQRMGVLPKFHGGTKKKKWMEQVTENLGKKAGDFGSKAKNTAHNIKKGAEEMVEAAGDKIKDGASWLGDKIGDVWDYVQHPGKLVNKVMSGLNINFGGGANATVKIAKGAYSLLKKKLVDKVKSWFEDFGGGGDGSYLFDHPIWQRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRSGSGVNKAASAWAGDIRRAAKRMGVNVTSADVGNIISLIQHESGGNAGITQSSSLRDINVLQGNPAKGLLQYIPQTFRHYAVRGHNNIYSGYDQLLAFFNNRYWRSQFNPRGGWSPSGPRRYANGGLITKHQLAEVGEGDKQEMVIPLTRRKRAIQLTEQVMRIIGMDGKPNNITVNNDTSTVEKLLKQIVMLSDKGNKLTDALIQTVSSQDNNLGSNDAIRGLEKILSKQSGHRANANNYMGGLTN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1] Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)