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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02182
- pan locus tag?: SAUPAN005049000
- symbol: SAOUHSC_02182
- pan gene symbol?: —
- synonym:
- product: tail length tape measure protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02182
- symbol: SAOUHSC_02182
- product: tail length tape measure protein
- replicon: chromosome
- strand: -
- coordinates: 2044037..2048689
- length: 4653
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3919549 NCBI
- RefSeq: YP_500668 NCBI
- BioCyc: G1I0R-2062 BioCyc
- MicrobesOnline: 1290624 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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4621ATGCCTAATCCTATAGGTAATATGGTCATAAAGGTTGATTTAGATGGTTCTGGATTCAAT
AGAGGTGTGACAGGTTTAAATAGGCAAATGAAAATGGTTTCGCGTGAGCTTTCGGCTAAT
TTATCACAATTTTCTAGATATGATAATTCATTAGAAAAGTCGAAGATAAAAGTCGAAGGT
TTGAGTAAAAAACAAAAAGTTCAAGCCCAGATTACTAAAGAGCTGAAAGATAGTTATGAC
AAACTTAGTAAAGAAACTGGTGAAAACAGTGCAAAGACACAAGCTGCGGCTGCTAAATAC
AATGAAGCTTACGCTAAATTAAACCAATATGAGCGAGAGTTAAATCAAGCCACACAAGAA
TTAAAAGACATGCAAAGAGAGCAGAAAGCATTAAATACTGCAATGGGAAAACTTGGTACC
AACTTTAATAATTTTGGTCCTAAACTTCAAGAAATTGGTAACAGTATGAAAAATGTAGGC
CGTAACATGACTATGTATGTAACTGCGCCGGTGGTTGCTGGGTTTGCTGTAGCAGCTAAA
AAAGGTATTGAATTCGATGACAGTATGAGAAAAGTTAAAGCAACTTCAGGTGCTACTGGG
GAAGAGTTTGAAGCTTTGAAGAAAAAGGCTCGCGAAATGGGTGCAACAACAAAATTTAGT
GCATCAGATTCGGCTGAAGCATTAAATTACATGGCACTTGCTGGTTGGGATTCTAAGCAA
ATGATGGAAGGTTTAAGCGGAGTTATGGATTTAGCGGCAGCATCTGGCGAAGAACTGGAA
GCAGTAAGTGACATTGTTACAGATGGACTAACGGCATTCGGTTTAAAAGCAAAGGATAGT
GGTCATTTTGCGGACATTTTAGCACAAACTAGCTCGAAGGCAAATACGGATGTTAGAGGG
CTCGGAGAAGCTTTTAAATATGTCGCTCCTGTAGCAGGTGCGTTAGGTTACACGATTGAA
GATACATCTATTGCGATAGGTTTAATGAGTAATGCTGGTATCAAAGGTGAAAAAGCAGGT
ACAGCGTTACGAACAATGTTCACCAATCTTTCAAGTCCAACTAGAGCTATGGGGAATGAA
ATGGAACGCTTAGGAATATCTATTACAGATAGTAATGGGAAAATGATTCCTATGCGAAAG
CTTTTAGACCAACTGAGGGAAAAATTTAAACATCTTTCAAAAGACCAACAAGCTAGTTCT
GCAGCTACAATATTTGGTAAAGAAGCGATGTCAGGAGCATTAGCGATTATAAATGCTTCT
GATGAAGACTATCAAAAGTTAACCAAATCTATAGATTCATCTACCGGCGCATCTAAAAGA
ATGGCCGATACAATGGAATCTGGTTTAGGTGGGAAATTAAGAACTTTAAGGTCGCAATTA
GAAGAACTAGCCTTAACGATTTATGACAGAATAGAACCAGCACTAAAGATTATAGTAAGT
GCTTTTAGCAAAGTAGTGACATGGGTTACTAAATTACCAACGTCAATTCAATTAGCGGTT
GTTGGGTTTGGATTATTTGCAGCAGTTTTAGGTCCTTTAGTTTTTATGTTCGGTTTATTT
ATCAGCGTGATGGGGAATGCAATGACAGTTTTAGGACCCTTGTTAATAAACGTTAATAAA
GCTGGTGGTTTATTCGCGTTTTTAAGAACTAAAATCGCATCACTTGTTAAACTATTTCCG
ATTTTAGGTGTGTCGATATCAAGTTTAACGTTACCTATAACATTAATTGTAGGTGCATTA
GTTGGTATTGGCATAGCTTTCTATCAAGCTTATAAACGTTCAGAAACTTTTAGAAATATT
GTAAATCAGGCAATCTCTGGTGTAGCAAACGCATTTAAAGCAGCTAAACTAGCGTTACAA
GGTTTCTTTGATTTATTCAAAGGTGATAGTAAAGGCGCGGTTACCCTAGAGAAGATATTT
CCACCCGAAACTGTAGCAGGAATACAAAATGTAGTTAATACGATTAGAACAACTTTCTTT
AAAGTAGTTGATGCAATCGTTGGTTTCGCCAAAGAGATAGGCGCTCAATTAGCCTCTTTC
TGGAAAGAGAACGGCTCAGAAATAACACAAGCTTTGCAAAATATAGCTGGTTTCATTAAA
GCAACCTTTGAATTTATTTTTAACTTTATTATTAAACCAATCATGTTTGCGATTTGGCAA
GTGATGCAATTTATTTGGCCGGCGGTTAAAGCTTTGATTGTCAGCACTTGGGAAAATATC
AAAGGTGTAATACAAGGGGCTATTAATATTATTTTGGGTATTATCAAAGTGTTCTCTAGT
CTTTTCACAGGAAACTGGCGAGGCGTTTGGGACGGCATTGTAATGATACTGAAAGGTACT
GTGCAGTTAATTTGGAATTTAATACAACTGTGGTTTGTAGGTAAGATTCTAGGTGTTGTT
AGATACTTTGGTGGATTGCTTAAAGGTTTAATATCCGGTATCTGGGGTGTTATCAAAGGT
ATTTTCACAAAATCATTATCTGCAATTTGGAATGCAACGAAAAGTATTTTTGGTTTCTTA
TACAATAGTGTTAAATCTATTTTCACTAATATGAAAAACTGGTTATCTAGTACGTGGAAT
AATATCAAAAGCAATACCGTCGGCAAGGCTCATTCGTTATTTACGGGTGTAAGGTCTAAA
TTCACAAGTTTATGGAATGCGACGAAAGATATATTTACTAAATTAAGAAATTGGATGTCA
AACATCTGGAACTCTATTAAAGATAACACGGTAGGTATAGCTGGTCGTTTGTGGGATAAA
GTACGTAATATCTTCGGAAACATGCGTGACGGTTTAAAATCTATCATTGGTAAAATTAAA
GATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACTTAATAAATTAATTGAAGGC
TTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACCTAGGTTACACACTGGTACA
GAGCACACACATACTACTACAAGATTAGTTAAGAACGGTAAGATTGCACGTGATACATTC
GCTACAGTTGGGGATAAAGGACGTGGAAATGGTCCAAATGGTTTTAGAAATGAAATGATT
GAATTCCCTAATGGTAAACGTGTAATCACACCTAGTACAGACACTACTGCTTATTTACCT
AAAGGCTCAAAAGTATACAACGGTGCACAAACTTATTCAATGTTAAACGGAACGCTTCCG
AGATTTCATTTCGGTACTACTATGTGGAAAGATATTAAATCTAGTGCATCATCGGCATTT
AACTGGACAAAAGATCAAATAGGTAAAGGCACAAAGTGGCTTGGCGATAAAGTTGGTGAT
GTCATGGACTTTATCGATAATCCAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGA
GTTGATTTCAGTTCTCTAACTAAAGGTATGGGTATTGCTGGCGATATAACAAAAGCTGCA
TGGTCTAAGATTAAGAAAAGTGCAATCAAGTGGCTTGAGGATGCTTTCGCAGAGTCGGGT
GATGGCGGTGTATTAGATATGAGTAAATTACGTTACTTATACGGTCACACTGCTGCTTAT
ACACGAGAAACCGGACGCCCATTCCATGAAGGTCTGGATTTTGATTACATTTACGAACCT
GTTCCATCAACCATTAATGGTAGAGCACAAGTTATGCCTGTTCATAATGGTGGTTATGGA
AAATGGGTGAAAATTGTAAAGGGCGCCTTAGAAGTTATTTATGCACATTTATCTAAATAT
AAAGTTAAAACTGGTCAACAAGTTAGGGTCGGACAGACTGTTGGTATATCGGGGAATACG
GGGTTTAGTACAGGACCTCACTTACATTATGAGATGCGTTGGAATGGAAGACATAGAGAC
CCGTTACCGTGGTTAAGAAAGAATAATGGGGGCGGCAAAAGTACACCCGGTGGTAATGGT
GCAGCTAATGCTAGACGAGCTATTAAGGCTGCTCAAAATATTTTAGGAGGAAGGTATAAG
GCGAGTTGGATTACTAACGAGATGATGCGTGTTGCGAGTCGTGAATCCAATTATACAGCT
AATGCAGTCAATAATTGGGATAGCAACGCAAGAGCTGGTATACCTTCAAGAGGTATGTTC
CAAATGATAGATCCTTCATTTAGAGCGTACGCAAAGTCGGGTTACAATAATCCTCTCAAC
CCAACTCATCAAGCTATATCGGCTATGAGATATATTGTGGGTAAATGGGTACCAAGAACA
GGCTCATGGAGAGCTGCGTTCAAACGCGCTGGTGATTACGCATATGCTACTGGTGGCAAA
GTCTATAACGGATTGTATCACTTAGGGGAAGAAGGATATCCAGAGTGGATAATACCTACT
GATCCAAGTAGAGCGAACGAAGCACACAAATTATTAGCTTTAGCTGCTAACGATATTGAT
AACCGCTCTAAAAATAAGCGACCAAACAACTTACCAAATCCAAGTATAAGTAATAGTGAT
ACAAACTATATTCATACATTGGAGAATAAACTGGATGCGGTTATTAATTGTTTGGTTAGT
TTGGTTGAGTCTAATCAAGTTATTGCAGATAAGGATTACGAACCAGTTATTAATAAGTAT
GTGTTTGAAGATGAGGTAAATAATTCTATCGATAAACGAGAGCGTCACGAATCTACAAGA
GTTAGATTTAGAAGAGGAGGCACGATAATCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02182
- symbol: SAOUHSC_02182
- description: tail length tape measure protein
- length: 1550
- theoretical pI: 10.36
- theoretical MW: 169957
- GRAVY: -0.182258
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 273.9)and 10 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 31.8)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 31.8)Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 25.6)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 25.6)helix-rich protein (TIGR04523; HMM-score: 20.9)two transmembrane protein (TIGR04527; HMM-score: 16.6)WXG100 family type VII secretion target (TIGR03930; HMM-score: 8.8)Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 7.5)Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 7.3)conserved hypothetical protein (TIGR02231; HMM-score: 7.1)
- TheSEED :
- Phage tail, tail length tape-measure protein
- PFAM: no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 192.4)and 29 moreHybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 74.9)no clan defined DUF4200; Domain of unknown function (DUF4200) (PF13863; HMM-score: 19.7)Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 19.2)TMP_2; Prophage tail length tape measure protein (PF06791; HMM-score: 16.4)DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 16.2)Reo_sigma (CL0326) Reo_sigmaC; Reovirus sigma C capsid protein (PF04582; HMM-score: 15.1)BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 14.2)P-loop_NTPase (CL0023) DUF3584; Protein of unknown function (DUF3584) (PF12128; HMM-score: 13.4)no clan defined Tup_N; Tup N-terminal (PF08581; HMM-score: 12.4)P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 12.4)Fusion_gly (CL0595) Corona_S2; Coronavirus S2 glycoprotein (PF01601; HMM-score: 12)no clan defined Fib_alpha; Fibrinogen alpha/beta chain family (PF08702; HMM-score: 11.8)DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 11.3)FTA4; Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 (PF13093; HMM-score: 11)UPF0565; Uncharacterised protein family UPF0565 (PF10561; HMM-score: 10.5)TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 10.4)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9.7)Tropomyosin-lke (CL0452) Tropomyosin; Tropomyosin (PF00261; HMM-score: 9.6)no clan defined Laminin_II; Laminin Domain II (PF06009; HMM-score: 9.4)Snapin_Pallidin; Snapin/Pallidin (PF14712; HMM-score: 9.4)DUF2203; Uncharacterized conserved protein (DUF2203) (PF09969; HMM-score: 9)GOLD-like (CL0521) EMP24_GP25L; emp24/gp25L/p24 family/GOLD (PF01105; HMM-score: 8.9)no clan defined Collagen_mid; Bacterial collagen, middle region (PF15984; HMM-score: 8.6)Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 7.3)Spc7; Spc7 kinetochore protein (PF08317; HMM-score: 6.8)ALIX_LYPXL_bnd; ALIX V-shaped domain binding to HIV (PF13949; HMM-score: 6.7)Prominin; Prominin (PF05478; HMM-score: 6.3)DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 6)IFT57; Intra-flagellar transport protein 57 (PF10498; HMM-score: 5.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.03
- Cytoplasmic Membrane Score: 8.77
- Cellwall Score: 0.22
- Extracellular Score: 0.97
- Internal Helices: 2
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004562
- TAT(Tat/SPI): 0.000989
- LIPO(Sec/SPII): 0.001995
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPNPIGNMVIKVDLDGSGFNRGVTGLNRQMKMVSRELSANLSQFSRYDNSLEKSKIKVEGLSKKQKVQAQITKELKDSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYERELNQATQELKDMQREQKALNTAMGKLGTNFNNFGPKLQEIGNSMKNVGRNMTMYVTAPVVAGFAVAAKKGIEFDDSMRKVKATSGATGEEFEALKKKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEELEAVSDIVTDGLTAFGLKAKDSGHFADILAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISITDSNGKMIPMRKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINASDEDYQKLTKSIDSSTGASKRMADTMESGLGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTKLPTSIQLAVVGFGLFAAVLGPLVFMFGLFISVMGNAMTVLGPLLINVNKAGGLFAFLRTKIASLVKLFPILGVSISSLTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKGDSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEITQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIKVFSSLFTGNWRGVWDGIVMILKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGIWGVIKGIFTKSLSAIWNATKSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFTKLRNWMSNIWNSIKDNTVGIAGRLWDKVRNIFGNMRDGLKSIIGKIKDHIGGMVDAIKKGLNKLIEGLNWVGGKLGMDEIPRLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEMIEFPNGKRVITPSTDTTAYLPKGSKVYNGAQTYSMLNGTLPRFHFGTTMWKDIKSSASSAFNWTKDQIGKGTKWLGDKVGDVMDFIDNPGKLLNYVLQAFGVDFSSLTKGMGIAGDITKAAWSKIKKSAIKWLEDAFAESGDGGVLDMSKLRYLYGHTAAYTRETGRPFHEGLDFDYIYEPVPSTINGRAQVMPVHNGGYGKWVKIVKGALEVIYAHLSKYKVKTGQQVRVGQTVGISGNTGFSTGPHLHYEMRWNGRHRDPLPWLRKNNGGGKSTPGGNGAANARRAIKAAQNILGGRYKASWITNEMMRVASRESNYTANAVNNWDSNARAGIPSRGMFQMIDPSFRAYAKSGYNNPLNPTHQAISAMRYIVGKWVPRTGSWRAAFKRAGDYAYATGGKVYNGLYHLGEEGYPEWIIPTDPSRANEAHKLLALAANDIDNRSKNKRPNNLPNPSISNSDTNYIHTLENKLDAVINCLVSLVESNQVIADKDYEPVINKYVFEDEVNNSIDKRERHESTRVRFRRGGTII
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)
⊟Relevant publications[edit | edit source]