From AureoWiki
Jump to navigation Jump to search

NCBI: 03-AUG-2016

Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_03030
  • pan locus tag?: SAUPAN006453000
  • symbol: SAOUHSC_03030
  • pan gene symbol?:
  • synonym:
  • product: sodium, sulfate symporter

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_03030
  • symbol: SAOUHSC_03030
  • product: sodium, sulfate symporter
  • replicon: chromosome
  • strand: +
  • coordinates: 2801302..2802720
  • length: 1419
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGAAAACACGGTTAAATATCGTAAGTTTATACTCCCTATCGTTGTAGGTCTCCTTATT
    TGGGCACTTACACCTTTTAAACCGGATGCTGTGGATCCAACAGCATGGTATATGTTCGCA
    ATATTCGTCGCGACAATCATTGCTTGTATTACACAACCGATGCCAATTGGGGCCGTCTCT
    ATAATTGGATTTACAATCATGGTACTCGTTGGCATTGTTGACATGAAAACGGCTGTCGCT
    GGTTTTGGTAATAATAGCATTTGGTTAATTGCTATGGCATTTTTCATTTCGAGAGGATTT
    GTGAAAACAGGTCTTGGTAGACGTATCGCACTTCATTTCGTCAAATTATTTGGTAAAAAA
    ACATTAGGATTAGCATATTCTATCGTCGGTGTAGATTTAATTCTAGCGCCTGCTACACCA
    AGTAATACCGCGCGTGCTGGTGGAATCATGTTCCCAATTATCAAATCACTTTCTGAATCA
    TTTGGTTCGAAACCGAAAGACGGATCAGCACGCAAAATGGGTGCATTTCTTGTTTTCACA
    GAATTCCAAGGTAATTTAATTACTGCGGCTATGTTTTTAACTGCAATGGCCGGTAACCCC
    CTTGCACAAAATTTAGCATCTAGCACATCTAATGTTCACATTACATGGATGAATTGGTTT
    CTAGCTGCTTTAGTTCCTGGACTTGTTTCCTTAATTGTTGTACCTTTTATTATTTATAAA
    ATTTATCCACCAACTGTTAAAGAAACACCAAATGCTAAGAGTTGGGCTGAAAATGAATTA
    GCGACTATGGGTAAAATCGCTTTAGCTGAAAAATTTATGATTGGTATTTTTGTCGTTGCG
    TTAACACTATGGATTGTCGGAAGTTTCATTCATATTGATGCAACTTTAACGGCCTTTATT
    GCGCTAGCATTGTTATTATTGACAGGCGTCTTAACATGGCAAGACATTTTAAACGAAACA
    GGTGCTTGGAACACATTAGTATGGTTCTCAGTATTAGTGTTAATGGCCGACCAATTAAAC
    AAGCTTGGATTTATTCCTTGGTTAAGTAAATCCATTGCTACAAGTCTTGGTGGCTTAAGC
    TGGCCTATAGTCCTGGTCATTTTAATATTGTTCTACTTCTATTCACATTACTTATTTGCA
    AGTTCTACAGCACATATCAGTGCGATGTATGCAGCATTACTAGGCGTTGCCATCGCAGCC
    GGTGCACCACCATTATTCAGTGCATTAATGTTAGGTTTCTTCGGTAACCTATTAGCTTCA
    ACAACACACTATAGTAGTGGTCCAGCGCCGATTCTATTCTCTTCAGGTTACGTGACTCAA
    AAACGTTGGTGGACAATGAACTTAATATTAGGTTTCGTCTACTTTATTATCTGGATTGGT
    TTAGGATCACTTTGGATGAAAGTAATTGGTATATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1419

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAOUHSC_03030
  • symbol: SAOUHSC_03030
  • description: sodium, sulfate symporter
  • length: 472
  • theoretical pI: 10.1382
  • theoretical MW: 51341.1
  • GRAVY: 0.893644

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 432.9)
    Metabolism Transport and binding proteins Anions transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 432.9)
  • TheSEED  :
    • 2-oxoglutarate/malate translocator
  • PFAM:
    IT (CL0182) Na_sulph_symp; Sodium:sulfate symporter transmembrane region (PF00939; HMM-score: 507.1)
    and 3 more
    CitMHS; Citrate transporter (PF03600; HMM-score: 51.3)
    no clan defined DUF751; Protein of unknown function (DUF751) (PF05421; HMM-score: 14.5)
    DUF5313; Family of unknown function (DUF5313) (PF17240; HMM-score: 13.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.114557
    • TAT(Tat/SPI): 0.001209
    • LIPO(Sec/SPII): 0.036748
  • predicted transmembrane helices (TMHMM): 12

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MENTVKYRKFILPIVVGLLIWALTPFKPDAVDPTAWYMFAIFVATIIACITQPMPIGAVSIIGFTIMVLVGIVDMKTAVAGFGNNSIWLIAMAFFISRGFVKTGLGRRIALHFVKLFGKKTLGLAYSIVGVDLILAPATPSNTARAGGIMFPIIKSLSESFGSKPKDGSARKMGAFLVFTEFQGNLITAAMFLTAMAGNPLAQNLASSTSNVHITWMNWFLAALVPGLVSLIVVPFIIYKIYPPTVKETPNAKSWAENELATMGKIALAEKFMIGIFVVALTLWIVGSFIHIDATLTAFIALALLLLTGVLTWQDILNETGAWNTLVWFSVLVLMADQLNKLGFIPWLSKSIATSLGGLSWPIVLVILILFYFYSHYLFASSTAHISAMYAALLGVAIAAGAPPLFSALMLGFFGNLLASTTHYSSGPAPILFSSGYVTQKRWWTMNLILGFVYFIIWIGLGSLWMKVIGIF

Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [1] [2]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit | edit source]