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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_3042a
  • pan locus tag?: SAUPAN006472000
  • symbol: SAOUHSC_3042a
  • pan gene symbol?: vraH2
  • synonym:
  • product: SAOUHSC_13820

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_3042a
  • symbol: SAOUHSC_3042a
  • product: SAOUHSC_13820
  • replicon: chromosome
  • strand: +
  • coordinates: 2812463..2812654
  • length: 192
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID: 16830705 NCBI
  • RefSeq: YP_008530245 NCBI
  • BioCyc: G1I0R-2862 BioCyc
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACT
    TGGTATAACGTCATTGCTTTAACAATACTTGTTATTGTATTAAGCTCATTCACAACACCA
    ATGATAGGCATTCCAGCTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAA
    AAAGGCAAGTAA
    60
    120
    180
    192

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_3042a
  • symbol: SAOUHSC_3042a
  • description: SAOUHSC_13820
  • length: 63
  • theoretical pI: 10.1048
  • theoretical MW: 7194.5
  • GRAVY: 0.12381

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 13.8)
  • TheSEED  :
    • FIG01108209: hypothetical protein
  • PFAM:
    no clan defined DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.113277
    • TAT(Tat/SPI): 0.001752
    • LIPO(Sec/SPII): 0.015458
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI: 542123278 NCBI
  • RefSeq: YP_008530245 NCBI
  • UniProt:
  • STRING:

⊟Protein sequence[edit | edit source]

  • MKFRELVKQSYEDLKNLTVTWYNVIALTILVIVLSSFTTPMIGIPAGLLGGSYYLKRREEKGK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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