Jump to navigation
Jump to search
COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 27-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SAP001 [new locus tag: SA_RS00005 ]
- pan locus tag?:
- symbol: rep
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAP001 [new locus tag: SA_RS00005 ]
- symbol: rep
- product: hypothetical protein
- replicon: pN315
- strand: +
- coordinates: 232..1215
- length: 984
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 1122768 NCBI
- RefSeq: NP_395537 NCBI
- BioCyc: see SA_RS00005
- MicrobesOnline: 143471 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCT
AAAGTATTCTTTACCAGTGAAAATTATAAAAATCTAACTAATGATATGAAAATAGCCTAT
GCTATCTTACGTGATCGCTTAAATTTATCTATTAAAAATAGCTGGGTTGATGAAGATGGT
AACATTTACTTTGTTTATTCAAATGAAAAGCTAATGGAAATCTTAAATTGTAAAAAAGAA
AAGTTAACAAAAATAAAAAAAGGGTTAGAAAACGATGGTCTACTCATTCAAAAACGACGT
GGTTTAAATAAACCAAATATTCTATATTTAATGAAACCTATTGTCACAGAACGTGATATT
TACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTT
TCGAACGTCCAGAAGTTCGAAAATCGAACGTCCAGAAGTTCGAAAATCGAACGTCCAGAA
GTTCGAAAATCGAACACTAATGATACTGACTTTAATGACATTGACTTTAATGATACTGAG
AATAATGATATGAATGACTTGAATGATATAAAGTACAAAAATGAAATTAGTAATCATTCA
AATCATTCAAATCAATTTACACATAATTTTGATGATAAAGAAATGCTATTGCAAGAATTC
CCAGAACAACTAACTAATTATTTATTAAAATATGATTATAGAGATTTAGAAATCATAAAG
GCTGTTATTCTTAAAGCAAAAAAATCATTTAATTCAAGGCATGAAGATATGCATTACATG
TTAGAGGACATTGAGGATGAAATATTAACTTCTTTAAAAAGACTTAAAAAAGCTATACAT
GATAGGGGAGTTAAAGGCCAAAAGGAAACAATCAAGTCAATGCAAGCTTATTTAATGCAA
ACAATTCTAACTGAACTTGAAGAAACACATGCCCTTTATATGCGCCGTAAAAACATGAAA
CAATATAATATCTTTAATCAATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
984
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAP001 [new locus tag: SA_RS00005 ]
- symbol: Rep
- description: hypothetical protein
- length: 327
- theoretical pI: 7.2328
- theoretical MW: 39366.4
- GRAVY: -0.9737
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Replication initiation protein A
- ⊞PFAM: HTH (CL0123) RepA_N; Replication initiator protein A (RepA) N-terminus (PF06970; HMM-score: 107.1)and 1 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPYGEKDVRFSNVQKFENRTSRSSKIERPEVRKSNTNDTDFNDIDFNDTENNDMNDLNDIKYKNEISNHSNHSNQFTHNFDDKEMLLQEFPEQLTNYLLKYDYRDLEIIKAVILKAKKSFNSRHEDMHYMLEDIEDEILTSLKRLKKAIHDRGVKGQKETIKSMQAYLMQTILTELEETHALYMRRKNMKQYNIFNQ
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available