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COLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 27-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SAP003 [new locus tag: SA_RS00010 ]
  • pan locus tag?:
  • symbol: SAP003
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAP003 [new locus tag: SA_RS00010 ]
  • symbol: SAP003
  • product: hypothetical protein
  • replicon: pN315
  • strand: -
  • coordinates: 2388..3080
  • length: 693
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAAAATTATAAAATTATTTTCAATAATTTCCTTGTTCCTACTGGTATTTAGCGCGAAT
    TTTTCTAATGCTTACGCAAATGAAGAACAAAAAAGTTCTTTACTAGAAAATCAAAAAGAA
    AAATTGAAAAGCAAAAACATCGAAGTATCACAAATGACCAAGAAAGAAATAAGTTTTCTA
    GAACAATTGCAAAATAAAAATGAAGATATGCAAAAATTCGAAAAGCAAATGAAAAAAGAA
    GGATTTAAAAAAATAAAGCTAGAAGACAAAAATTCTAAATTAAAATATCTAGCTACAGAA
    GCAAATGATAAAAATGCATATGGCTACATAGCTAATAACGCTTATAAAAATGAAAAAACA
    AAAGAAATTGTAGTTTCTGAAACAATATATGATAACTACAACAAAAAAATCACAAAATTC
    ATTGCCGAAAAAAGAAGTATGACTGAAAACAAAGAGGGAAAAATACTTATTAACAAAAAT
    TACGTTGAATATAAGGCTGAAAAAGTTGATAAAAACAGACCGGTAACATATGCAGGATTC
    AAATGGAACGGCAAAGCATTCGCTTGTAGTATGGCTGGACTTTATGCATGTGCTCACTAC
    TGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGA
    ACTGCATTTGCAGCTGGATGCTCTGTAGGTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    693


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAP003 [new locus tag: SA_RS00010 ]
  • symbol: SAP003
  • description: hypothetical protein
  • length: 230
  • theoretical pI: 9.64595
  • theoretical MW: 26072
  • GRAVY: -0.484348

⊟Function[edit | edit source]

  • TIGRFAM:
    putative immunity protein/bacteriocin (TIGR04450; HMM-score: 270.5)
    and 3 more
    Cellular processes Cellular processes Toxin production and resistance halocin C8-like bacteriocin domain (TIGR04449; HMM-score: 8.8)
    SH3 domain protein (TIGR04211; HMM-score: 4.4)
    integral membrane protein TIGR01906 (TIGR01906; HMM-score: 4.1)
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    no clan defined DUF2730; Protein of unknown function (DUF2730) (PF10805; HMM-score: 17.2)
    and 4 more
    MazG (CL0231) Nuf2_DHR10-like; Nuf2, DHR10-like domain (PF18595; HMM-score: 13.4)
    Beta-tent (CL0080) Mss4; Mss4 protein (PF04421; HMM-score: 13.2)
    no clan defined Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 8.3)
    ATP_synthase (CL0255) ATP-synt_8; ATP synthase protein 8 (PF00895; HMM-score: 7.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.0021
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.9977
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: -0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: FSNAYANE
  • SignalP: Signal peptide SP(Sec/SPI) length 26 aa
    • SP(Sec/SPI): 0.989144
    • TAT(Tat/SPI): 0.000746
    • LIPO(Sec/SPII): 0.008779
    • Cleavage Site: CS pos: 26-27. AYA-NE. Pr: 0.9556
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKIIKLFSIISLFLLVFSANFSNAYANEEQKSSLLENQKEKLKSKNIEVSQMTKKEISFLEQLQNKNEDMQKFEKQMKKEGFKKIKLEDKNSKLKYLATEANDKNAYGYIANNAYKNEKTKEIVVSETIYDNYNKKITKFIAEKRSMTENKEGKILINKNYVEYKAEKVDKNRPVTYAGFKWNGKAFACSMAGLYACAHYCGVWAIVNPIAGGVCEAVCGTAFAAGCSVG

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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