PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000041000
• symbol^?: —
• synonym:
• description^?: orf1260
• strand^?: +
• coordinates^?: 41042..55719
• synteny block^?: BlockID0000380
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
SACOL0026
N315:
SA0024
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0027
04-02981:
SA2981_0025
08BA02176:
—
11819-97:
MS7_0027
6850:
—
71193:
—
ECT-R 2:
ECTR2_28
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00250
JH1:
SaurJH1_0025
JH9:
SaurJH9_0025
JKD6008:
SAA6008_00026
JKD6159:
SAA6159_00025
LGA251:
—
M013:
—
MRSA252:
SAR0025
MSHR1132:
SAMSHR1132_00260
MSSA476:
—
Mu3:
SAHV_0025
Mu50:
SAV0025
MW2:
MW0025
RF122:
—
ST398:
—
T0131:
SAT0131_00028 (ansA)
TCH60:
HMPREF0772_10442
TW20:
—
USA300_TCH1516:
USA300HOU_0025
VC40:
—

⊟Genome Viewer

COL
N315
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRHNIFYNRREFQMIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
  N315            MRHNIFYNRREFQMIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
  USA300_FPR3757  -------------MIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
                               ***********************************************
  
  COL             IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
  N315            IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
  USA300_FPR3757  IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
                  ************************************************************
  
  COL             KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
  N315            KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
  USA300_FPR3757  KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
                  ************************************************************
  
  COL             GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
  N315            GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
  USA300_FPR3757  GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
                  ************************************************************
  
  COL             IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
  N315            IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
  USA300_FPR3757  IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
                  ************************************************************
  
  COL             ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
  N315            ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
  USA300_FPR3757  ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
                  ************************************************************
  
  COL             EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
  N315            EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
  USA300_FPR3757  EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
                  ************************************************************
  
  COL             EAIQYKVFGEK
  N315            EAIQYKVFGEK
  USA300_FPR3757  EAIQYKVFGEK
                  ***********