PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000126000
• symbol^?: —
• synonym:
• description^?: hypothetical protein
• strand^?: -
• coordinates^?: 151465..156864
• synteny block^?: BlockID0001000
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL0037
N315:
SA0054
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0036
04-02981:
SA2981_0058
08BA02176:
C248_0049
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0045
JH9:
SaurJH9_0045
JKD6008:
SAA6008_00055
JKD6159:
SAA6159_00035
LGA251:
—
M013:
M013TW_0059
MRSA252:
—
MSHR1132:
SAMSHR1132_00360
MSSA476:
SAS0029
Mu3:
SAHV_0057
Mu50:
SAV0058
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_00053
TCH60:
—
TW20:
SATW20_00890
USA300_TCH1516:
USA300HOU_0035
VC40:
—

⊟Genome Viewer

COL
N315
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ----MNTIKSTINTEAIFSDDEQHRYLLKKTWDEKKPACTVITMYPHLDGVLSLDLTTVL
  N315            MIIYMNTIKNTIYTEAIFSKDEKHRYLLKKTWDEKKPACTVITMYPHLDGVLSLDLTTVL
  USA300_FPR3757  ----MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKAACTVITMYPHLDGVLSLDLTTVL
                      *****.** ******.**:*************.***********************
  
  COL             ILNQLANTEQYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMKAISESDTVILAYGA
  N315            ILNQLANSERYGAVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAISESDTVILAYGA
  USA300_FPR3757  ILNQLANSERYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMKAISESDTVILAYGA
                  *******:*:*************:*********:***:**********************
  
  COL             YAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKARQKWILKS
  N315            YAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTLKA
  USA300_FPR3757  YAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKARQKWILKS
                  *******::**********************.**************** **: