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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN000387000
- symbol?: —
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- LysR family regulatory protein
- transcriptional regulator
- transcriptional regulator, putative
- LysR substrate binding domain, putative
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 395381..396265
- synteny block?: BlockID0001780
- occurrence?: in 42% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
C248_0083
11819-97:
—
6850:
RSAU_000040
71193:
ST398NM01_0107
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00580
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00073
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0064
Mu3:
—
Mu50:
—
MW2:
MW0064
RF122:
—
ST398:
SAPIG0107
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0102
VC40:
SAVC_00195
⊟Genome Viewer[edit | edit source]
COL | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
NCTC8325 MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
Newman MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
USA300_FPR3757 MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
************************************************************
COL GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
NCTC8325 GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
Newman GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
USA300_FPR3757 GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
************************************************************
COL LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
NCTC8325 LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
Newman LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
USA300_FPR3757 LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
************************************************************
COL DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
NCTC8325 DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
Newman DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
USA300_FPR3757 DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
************************************************************
COL VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
NCTC8325 VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
Newman VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
USA300_FPR3757 VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
**********************************************