PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000387000
• symbol^?: —
• synonym:
• description^?: LysR family transcriptional regulator

  descriptions from strain specific annotations:

  • LysR family transcriptional regulator
  • LysR family regulatory protein
  • transcriptional regulator
  • transcriptional regulator, putative
  • LysR substrate binding domain, putative
• strand^?: +
• coordinates^?: 395381..396265
• synteny block^?: BlockID0001780
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0072
N315:
—
NCTC8325:
SAOUHSC_00044
Newman:
NWMN_0035
USA300_FPR3757:
SAUSA300_0093
04-02981:
—
08BA02176:
C248_0083
11819-97:
—
6850:
RSAU_000040
71193:
ST398NM01_0107
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00580
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00073
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0064
Mu3:
—
Mu50:
—
MW2:
MW0064
RF122:
—
ST398:
SAPIG0107
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0102
VC40:
SAVC_00195

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
  NCTC8325        MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
  Newman          MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
  USA300_FPR3757  MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
                  ************************************************************
  
  COL             GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
  NCTC8325        GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
  Newman          GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
  USA300_FPR3757  GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
                  ************************************************************
  
  COL             LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
  NCTC8325        LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
  Newman          LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
  USA300_FPR3757  LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
                  ************************************************************
  
  COL             DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
  NCTC8325        DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
  Newman          DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
  USA300_FPR3757  DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
                  ************************************************************
  
  COL             VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
  NCTC8325        VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
  Newman          VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
  USA300_FPR3757  VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
                  **********************************************