PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000447000
• symbol^?: —
• synonym:
• description^?: hypothetical protein
• strand^?: -
• coordinates^?: 456508..456804
• synteny block^?: BlockID0001960
• occurrence^?: in 33% of 33 strains

Suggest symbol of "ssb-mec" and description of "cassette chromosome II/IVc/IVe ssDNA-binding protein" or "cassette chromosome ssDNA-binding protein" to harmonize with PMID 27571176 and PMID 30017563. This sequence variant of the ssb protein is associated with SCCmec type IIa, SCCmec type IVc and SCCmec type IVe MRSA.

⊟Orthologs

COL:
SACOL0044
N315:
SA0060
NCTC8325:
—
Newman:
—
USA300_FPR3757:
—
04-02981:
SA2981_0064
08BA02176:
—
11819-97:
MS7_0072
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0052
JH9:
SaurJH9_0051
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR0062
MSHR1132:
—
MSSA476:
SAS0035
Mu3:
SAHV_0063
Mu50:
SAV0064
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_10425
TW20:
—
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

COL
N315

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSYKQEDDFKKLKNRILGISINLPEGQTFTFHDLNRRANVQCSKAVQQNVGRWFAYFVKQ
  N315            MYFNQSDKFEQLKKKILGISFNLPEGEEFTFHDLNSRANVQCSKAVQQNVGRWFAYFVKH
                  * ::*.*.*::**::*****:*****: ******* ***********************:
  
  COL             APRVPFIIIGKNTNGHLVYMKVGPNPLNDSNPSKGGVR
  N315            APRVPFIIIGKDTHGHLVYLKTGPNPHYNSNPSKGGVR
                  ***********:*:*****:*.****  :*********