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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN000824000
- symbol?: —
- synonym:
- description?: ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- nickel/peptide ABC transporter ATP-binding protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1059666..1060433
- synteny block?: BlockID0003930
- occurrence?: in 6% of 34 strains
oppDA (oppDACME): nickel/oligopeptide ABC transporter ATP-binding protein ACME-OppD [1]
• this version of oppD is found in the Arginine Catabolic Mobile Element (ACME) that is sometimes found alongside the SCCmec cassette, particularly in USA300 MRSA strains. It encodes an opp3-like nickel/oligopeptide ABC transporter that, due to similarities to opp1/2 transporters, is more likely to transport metals than peptides, although substrate specificity has not yet been established.
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0081
VC40:
—
⊟Genome Viewer[edit | edit source]
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Dongliang Yu, Borui Pi, Meihong Yu, Yanfei Wang, Zhi Ruan, Ye Feng, Yunsong Yu
Diversity and evolution of oligopeptide permease systems in staphylococcal species.
Genomics: 2014, 104(1);8-13
[PubMed:24793159] [WorldCat.org] [DOI] (I p)Chunguang Liang, Dominik Schaack, Mugdha Srivastava, Shishir K Gupta, Edita Sarukhanyan, Anne Giese, Martin Pagels, Natalie Romanov, Jan Pané-Farré, Stephan Fuchs, Thomas Dandekar
A Staphylococcus aureus Proteome Overview: Shared and Specific Proteins and Protein Complexes from Representative Strains of All Three Clades.
Proteomes: 2016, 4(1);
[PubMed:28248218] [WorldCat.org] [DOI] (P e)Imran Khan, Sandy J MacDonald, Sigurbjörn Markússon, Paige J Kies, Cristina Kraemer-Zimpel, Callum Robson, Joanne L Parker, Simon Newstead, Dave Boucher, Neal D Hammer, Marjan Van Der Woude, Gavin H Thomas
Defined roles for the Staphylococcus aureus POT transporter DtpT in di/tripeptide uptake and glutathione utilisation inside human macrophages.
PLoS Pathog: 2025, 21(9);e1013535
[PubMed:41004555] [WorldCat.org] [DOI] (I e)