PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000838000
• symbol^?: sqr
• synonym:
• description^?: NAD(P)/FAD-dependent oxidoreductase

  descriptions from strain specific annotations:

  • NAD(P)/FAD-dependent oxidoreductase
  • FAD-dependent pyridine nucleotide-disulfide oxidoreductase
  • pseudogene
  • pyridine nucleotide-disulfide oxidoreductase family protein
  • sulfide-quinone reductase
• strand^?: +
• coordinates^?: 1088262..1089464
• synteny block^?: BlockID0004050
• occurrence^?: in 48% of 33 strains

⊟Orthologs

COL:
SACOL0065
N315:
SA0084
NCTC8325:
SAOUHSC_00037
Newman:
NWMN_0029
USA300_FPR3757:
SAUSA300_0087
04-02981:
SA2981_0088
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_46
ED133:
—
ED98:
SAAV_0036
HO 5096 0412:
—
JH1:
SaurJH1_0077
JH9:
SaurJH9_0075
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0058
Mu3:
SAHV_0087
Mu50:
SAV0088
MW2:
MW0058
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0094
VC40:
SAVC_00155

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---MNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYYQPLWTLVGAGVS
  N315            ---MNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYYQPLWTLVGAGVS
  NCTC8325        ---MNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYYQPLWTLVGAGVS
  Newman          MEKMNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYYQPLWTLVGAGVS
                     *********************************************************
  
  COL             SLKSSRKDMESVIPEGANWIKQAVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWSSI
  N315            SLKSSRKDMESVIPEGANWIKQAVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWSSI
  NCTC8325        SLKSSRKDMESVIPEGANWIKQAVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWSSI
  Newman          SLKSSRKDMESVIPEGANWIKQAVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWSSI
                  ************************************************************
  
  COL             KGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAED
  N315            KGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAED
  NCTC8325        KGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAED
  Newman          KGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAED
                  ************************************************************
  
  COL             YFRKHKIRSNANVIYATPKDALFDVGKYNKELERIVEERNITVNYNYNLVEIDGDKKVAT
  N315            YFRKHKIRSNANVIYATPKDALFDVGKYNKELERIVEERNITVNYNYNLVEIDGDKKVAT
  NCTC8325        YFRKHKIRSNANVIYATPKDALFDVGKYNKELERIVEERNITVNYNYNLVEIDGDKKVAT
  Newman          YFRKHKIRSNANVIYATPKDALFDVGKYNKELERIVEERNITVNYNYNLVEIDGDKKVAT
                  ************************************************************
  
  COL             FEHIKAYDRKTISYDMLHVTPPMGPLDVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALG
  N315            FEHIKAYDRKTISYDMLHVTPPMGPLDVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALG
  NCTC8325        FEHIKAYDRKTISYDMLHVTPPMGPLDVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALG
  Newman          FEHIKAYDRKTISYDMLHVTPPMGPLDVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALG
                  ************************************************************
  
  COL             DASNVPTSKTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDY
  N315            DASNVPTSKTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDY
  NCTC8325        DASNVPTSKTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDY
  Newman          DASNVPTSKTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDY
                  ************************************************************
  
  COL             NKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI
  N315            NKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI
  NCTC8325        NKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI
  Newman          NKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI
                  ****************************************