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Summary[edit | edit source]

  • pan ID?: SAUPAN000861000
  • symbol?:
  • synonym:
  • description?: tandem-type lipoprotein

      descriptions from strain specific annotations:

    • tandem-type lipoprotein
    • tandem lipoprotein
    • Membrane lipoprotein
    • putative lipoprotein
    • staphylococcus tandem lipoproteins family protein
  • strand?: +
  • coordinates?: 1128177..1153528
  • synteny block?: BlockID0004220
  • occurrence?: in 59% of 34 strains

csa1D : tandem conserved staphylococcal antigen 1D [1]

• binds extracellular DNA as a lipoprotein during biofilm formation

• exact number of tandem repeats varies and can expand or contract over the course of an infection

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0100
    08BA02176:
    C248_0090
    11819-97:
    6850:
    71193:
    ST398NM01_2805
    ECT-R 2:
    ECTR2_57
    ED133:
    ED98:
    SAAV_0068
    HO 5096 0412:
    SAEMRSA15_00690
    JH1:
    SaurJH1_0091
    JH9:
    SaurJH9_0088
    JKD6008:
    JKD6159:
    JSNZ:
    JSNZ_000044
    LGA251:
    M013:
    M013TW_0089
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_0099
    Mu50:
    SAV0100
    MW2:
    RF122:
    ST398:
    SAPIG0114
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0112
    VC40:
    SAVC_00245

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
    N315            MKRLNKLVLYISFLILVISFTAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRDD
    NCTC8325        MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
    Newman          MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
    USA300_FPR3757  MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
                    *************************:*****:****************************

    COL             EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
    N315            QFDKNDKGTWIINSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
    NCTC8325        EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
    Newman          EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
    USA300_FPR3757  EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
                    :***********.***********************************************

    COL             KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
    N315            KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
    NCTC8325        KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
    Newman          KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
    USA300_FPR3757  KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
                    ************************************************************

    COL             YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
    N315            YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
    NCTC8325        YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
    Newman          YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
    USA300_FPR3757  YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
                    ************************************************************

    COL             TFFTDSLHLEPSEDK
    N315            TFFTDSLHLEPSEDK
    NCTC8325        TFFTDSLHLEPSEDK
    Newman          TFFTDSLHLEPSEDK
    USA300_FPR3757  TFFTDSLHLEPSEDK
                    ***************

  1. Darya Belikova, Angelika Jochim, Jeffrey Power, Matthew T G Holden, Simon Heilbronner
    "Gene accordions" cause genotypic and phenotypic heterogeneity in clonal populations of Staphylococcus aureus.
    Nat Commun: 2020, 11(1);3526
    [PubMed:32665571] [WorldCat.org] [DOI] (I e)
    Christina Schluepen, Enrico Malito, Ambra Marongiu, Markus Schirle, Elisabeth McWhinnie, Paola Lo Surdo, Marco Biancucci, Fabiana Falugi, Vincenzo Nardi-Dei, Sara Marchi, Maria Rita Fontana, Benedetta Lombardi, Maria Grazia De Falco, C Daniela Rinaudo, Glen Spraggon, Mikkel Nissum, Fabio Bagnoli, Guido Grandi, Matthew J Bottomley, Sabrina Liberatori
    Mining the bacterial unknown proteome: identification and characterization of a novel family of highly conserved protective antigens in Staphylococcus aureus.
    Biochem J: 2013, 455(3);273-84
    [PubMed:23895222] [WorldCat.org] [DOI] (I p)
    Jeffrey S Kavanaugh, Caralyn E Flack, Jessica Lister, Erica B Ricker, Carolyn B Ibberson, Christian Jenul, Derek E Moormeier, Elizabeth A Delmain, Kenneth W Bayles, Alexander R Horswill
    Identification of Extracellular DNA-Binding Proteins in the Biofilm Matrix.
    mBio: 2019, 10(3);
    [PubMed:31239382] [WorldCat.org] [DOI] (I e)