PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000861000
• symbol^?: —
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • Membrane lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: +
• coordinates^?: 1128177..1153528
• synteny block^?: BlockID0004220
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
SACOL0083
N315:
SA0096
NCTC8325:
SAOUHSC_00055
Newman:
NWMN_0045
USA300_FPR3757:
SAUSA300_0103
04-02981:
SA2981_0100
08BA02176:
C248_0090
11819-97:
—
6850:
—
71193:
ST398NM01_2805
ECT-R 2:
ECTR2_57
ED133:
—
ED98:
SAAV_0068
HO 5096 0412:
SAEMRSA15_00690
JH1:
SaurJH1_0091
JH9:
SaurJH9_0088
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_0089
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0099
Mu50:
SAV0100
MW2:
—
RF122:
—
ST398:
SAPIG0114
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0112
VC40:
SAVC_00245

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
  N315            MKRLNKLVLYISFLILVISFTAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRDD
  NCTC8325        MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
  Newman          MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
  USA300_FPR3757  MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRDD
                  *************************:*****:****************************
  
  COL             EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
  N315            QFDKNDKGTWIINSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
  NCTC8325        EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
  Newman          EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
  USA300_FPR3757  EFDKNDKGTWIIGSEMVVQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKS
                  :***********.***********************************************
  
  COL             KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
  N315            KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
  NCTC8325        KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
  Newman          KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
  USA300_FPR3757  KDKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVPS
                  ************************************************************
  
  COL             YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
  N315            YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
  NCTC8325        YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
  Newman          YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
  USA300_FPR3757  YSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKKGEN
                  ************************************************************
  
  COL             TFFTDSLHLEPSEDK
  N315            TFFTDSLHLEPSEDK
  NCTC8325        TFFTDSLHLEPSEDK
  Newman          TFFTDSLHLEPSEDK
  USA300_FPR3757  TFFTDSLHLEPSEDK
                  ***************