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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000940000
- symbol?: —
- synonym:
- description?: ligase
- ligase
- capsular biosynthesis protein, putative
- O-antigen ligase family protein
- O-antigen polymerase
- O-Antigen Polymerase family protein
- Secreted polysaccharide polymerase
- Teichuronic acid biosynthesis protein TuaE,putative secreted polysaccharide polymerase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1200494..1201732
- synteny block?: BlockID0004760
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0132
08BA02176:
C248_0120
11819-97:
MS7_0122
6850:
RSAU_000085
71193:
ST398NM01_0145
ECT-R 2:
ECTR2_87
ED133:
SAOV_0079
ED98:
SAAV_0099
HO 5096 0412:
SAEMRSA15_00980
JH1:
SaurJH1_0122
JH9:
SaurJH9_0117
JKD6008:
SAA6008_00109
JKD6159:
SAA6159_00114
LGA251:
SARLGA251_01060
M013:
M013TW_0121
MRSA252:
SAR0133
MSHR1132:
SAMSHR1132_01070
MSSA476:
SAS0105
Mu3:
SAHV_0130
Mu50:
SAV0131
MW2:
MW0105
RF122:
SAB0070 (cps2H)
ST398:
SAPIG0145
T0131:
SAT0131_00119 (nusB)
TCH60:
HMPREF0772_10367 (cps2H)
TW20:
SATW20_01420
USA300_TCH1516:
USA300HOU_0143
VC40:
SAVC_00395
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILVYLLFFANHLLKANHFL
N315 MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILVYLLFFANHLLKANHFL
NCTC8325 MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILVYLLFFANHLLKANHFL
Newman MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILVYLLFFANHLLKANHFL
USA300_FPR3757 MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILVYLLFFANHLLKANHFL
************************************************************
COL QFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKV
N315 QFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKV
NCTC8325 QFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKV
Newman QFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKV
USA300_FPR3757 QFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKV
************************************************************
COL IVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVLAY
N315 IVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVLAY
NCTC8325 IVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVLAY
Newman IVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVLAY
USA300_FPR3757 IVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVLAY
************************************************************
COL KYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMSVIML
N315 KYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMLVIML
NCTC8325 KYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMSVIML
Newman KYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMSVIML
USA300_FPR3757 KYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMSVIML
******************************************************* ****
COL ILLCFTFYNINYYLFQLSDLDALPSLDRMAPIFEEGFASLNDSGSERSVVWINAISVIKY
N315 ILLCFTFYNINYYLFQLSDLDAVPSLDRMASIFEEGFASLNDSGSERSVVWINAILVIKY
NCTC8325 ILLCFTFYNINYYLFQLSDLDALPSLDRMASIFEEGFASLNDSGSERSVVWINAISVIKY
Newman ILLCFTFYNINYYLFQLSDLDALPSLDRMASIFEEGFASLNDSGSERSVVWINAISVIKY
USA300_FPR3757 ILLCFTFYNINYYLFQLSDLDALPSLDRMASIFEEGFASLNDSGSERSVVWINAISVIKY
**********************:*******.************************ ****
COL TLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNI
N315 TLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNI
NCTC8325 TLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNI
Newman TLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNI
USA300_FPR3757 TLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNI
************************************************************
COL SGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE
N315 SGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE
NCTC8325 SGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE
Newman SGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE
USA300_FPR3757 SGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE
****************************************************