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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000949000
- symbol?: tet38
- synonym:
- description?: tetracycline efflux MFS transporter Tet(38)
- tetracycline efflux MFS transporter Tet(38)
- putative tetracycline resistance protein
- tetracycline resistance protein
- tetracycline resistance protein, putative
- major facilitator superfamily protein
- major facilitator superfamily tetracycline:cation symporter
- major facilitator transporter
- membrane transporter
- MFS family major facilitator transporter, tetracycline:cation symporter
- Permease
- probable membrane transport protein
- putative transport system protein
- tetracycline resistance like-protein
- transmembrane protein
- transport system protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1209306..1210667
- synteny block?: BlockID0004850
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0138
08BA02176:
C248_0126
11819-97:
MS7_0128
6850:
RSAU_000091
71193:
ST398NM01_0151
ECT-R 2:
ECTR2_93
ED133:
SAOV_0084
ED98:
SAAV_0105
HO 5096 0412:
SAEMRSA15_01030
JH1:
SaurJH1_0128
JH9:
SaurJH9_0123
JKD6008:
SAA6008_00115
JKD6159:
SAA6159_00120
LGA251:
SARLGA251_01110 (tet38)
M013:
M013TW_0127
MRSA252:
SAR0139
MSHR1132:
SAMSHR1132_01130
MSSA476:
SAS0111
Mu3:
SAHV_0136
Mu50:
SAV0137
MW2:
MW0111
RF122:
SAB0076
ST398:
SAPIG0151
T0131:
SAT0131_00126
TCH60:
HMPREF0772_10361
TW20:
SATW20_01480 (tet38)
USA300_TCH1516:
USA300HOU_0149
VC40:
SAVC_00430
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISVTTVSWQATLAGLVIGI
N315 MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISVTTVSWQATLAGLVIGI
NCTC8325 MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISVTTVSWQATLAGLVIGI
Newman MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISVTTVSWQATLAGLVIGI
USA300_FPR3757 MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISVTTVSWQATLAGLVIGI
************************************************************
COL GAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLLLVGRIIQTAGLAAAETLY
N315 GAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLLLVGRIIQTAGLAAAETLY
NCTC8325 GAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLLLVGRIIQTAGLAAAETLY
Newman GAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLLLVGRIIQTAGLAAAETLY
USA300_FPR3757 GAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLLLVGRIIQTAGLAAAETLY
************************************************************
COL VIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFISTYLHWTNMFLIALIVVFTLPF
N315 VIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFISTYLHWTNMFLIALIVVFTLPF
NCTC8325 VIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFISTYLHWTNMFLIALIVVFTLPF
Newman VIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFISTYLHWTNMFLIALIVVFTLPF
USA300_FPR3757 VIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFISTYLHWTNMFLIALIVVFTLPF
************************************************************
COL LFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNFNWLYMIGALIAIIVFALYIKNA
N315 LFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNFNWLYMIGALIAIIVFALYIKNA
NCTC8325 LFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNFNWLYMIGALIAIIVFALYIKNA
Newman LFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNFNWLYMIGALIAIIVFALYIKNA
USA300_FPR3757 LFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNFNWLYMIGALIAIIVFALYIKNA
************************************************************
COL QRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTFPFIMEQIYHLQLDTTSLLLVPGYI
N315 QRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTFPFIMEQIYHLQLDTTSLLLVPGYI
NCTC8325 QRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTFPFIMEQIYHLQLDTTSLLLVPGYI
Newman QRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTFPFIMEQIYHLQLDTTSLLLVPGYI
USA300_FPR3757 QRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTFPFIMEQIYHLQLDTTSLLLVPGYI
************************************************************
COL VAVIVGALSGKIGEYLNSKQAIITAIILIALSLILPAFAVGNHISIFVISMIFFAGSFAL
N315 VAVIVGALSGKIGEYLNSKQAIITAIILIALSLILPAFAVGNHISIFVISMIFFAGSFAL
NCTC8325 VAVIVGALSGKIGEYLNSKQAIITAIILIALSLILPAFAVGNHISIFVISMIFFAGSFAL
Newman VAVIVGALSGKIGEYLNSKQAIITAIILIALSLILPAFAVGNHISIFVISMIFFAGSFAL
USA300_FPR3757 VAVIVGALSGKIGEYLNSKQAIITAIILIALSLILPAFAVGNHISIFVISMIFFAGSFAL
************************************************************
COL MYAPLLNEAIKTIDLNMTGVAIGFYNLIINVAVSVGIAIAAALIDFKALNFPGNDALSSH
N315 MYAPLLNEAIKTIDLNMTGVAIGFYNLIINVAVSVGIAIAAALIDFKALNFPGNDALSSH
NCTC8325 MYAPLLNEAIKTIDLNMTGVAIGFYNLIINVAVSVGIAIAAALIDFKALNFPGNDALSSH
Newman MYAPLLNEAIKTIDLNMTGVAIGFYNLIINVAVSVGIAIAAALIDFKALNFPGNDALSSH
USA300_FPR3757 MYAPLLNEAIKTIDLNMTGVAIGFYNLIINVAVSVGIAIAAALIDFKALNFPGNDALSSH
************************************************************
COL FGIILIILGLMSIVGLVLFVSLNRWTQSEK
N315 FGIILIILGLMSIVGLVLFVILNRWTQSEK
NCTC8325 FGIILIILGLMSIVGLVLFVSLNRWTQSEK
Newman FGIILIILGLMSIVGLVLFVSLNRWTQSEK
USA300_FPR3757 FGIILIILGLMSIVGLVLFVSLNRWTQSEK
******************** *********