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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN000961000
- symbol?: —
- synonym:
- description?: pseudogene
- pseudogene
- transposase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1221188..1221694
- synteny block?: BlockID0004960
- occurrence?: in 15% of 34 strains
ψ tnpSep3 : degenerate ISSep3 family transposase pseudogene [1]
Staphylococci contain several degenerate insertion sequences that are no longer likely to be functional. This Sep3 family transposase pseudogene contains a premature TAY→TAA stop codon at position 17 that is unlikely to be avoided by frame-slipping or other bypass mechanisms. It also requires frame slipping at position 85. Although there is a slippery sequence in that region suggestive of potential ribosomal frame slipping, this is not a mechanism involved in translation of bona fide ISSep3.
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_01120
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
JSNZ:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0122
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0161
VC40:
—
⊟Genome Viewer[edit | edit source]
| COL | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: