PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000964000
• symbol^?: —
• synonym:
• description^?: pseudogene

  descriptions from strain specific annotations:

  • pseudogene
  • putative transcriptional regulator
• strand^?: +
• coordinates^?: 1223677..1223908
• synteny block^?: BlockID0004990
• occurrence^?: in 21% of 33 strains

⊟Orthologs

COL:
—
N315:
—
NCTC8325:
SAOUHSC_00108
Newman:
NWMN_0089
USA300_FPR3757:
SAUSA300_0148
04-02981:
—
08BA02176:
—
11819-97:
MS7_0137
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0120
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0158
VC40:
SAVC_00475

⊟Genome Viewer

NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MIEMSRPVKMNSLLKLYFDRNLLTPQKLLNYLKVDETFLNHLAGINLKLFKDYVNENREY
  Newman          MIEMSRPVKMNSLLKLYFDRNLLTPQKLLNYLKVDETFLNHLAGINLKLFKDYVNENREY
  USA300_FPR3757  MIEMSRPVKMNSLLKLYFDRNLLTPQKLLNYLKVDETFLNHLAGINLKLFKDYVNENREY
                  ************************************************************
  
  NCTC8325        NITNLYK
  Newman          NITNLYK
  USA300_FPR3757  NITNLYK
                  *******