PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000979000
• symbol^?: capE
• synonym:
• description^?: UDP-glucose 4-epimerase

  descriptions from strain specific annotations:

  • UDP-glucose 4-epimerase
  • capsular polysaccharide biosynthesis protein Cap5E
  • capsular polysaccharide biosynthesis protein CapE
  • capsular polysaccharide synthesis enzyme CapE, putative
  • capsular polysaccharide synthesis protein Cap8E
  • NAD-dependent epimerase/dehydratase family protein
  • capsular polysaccharide synthesis enzyme Cap8E
  • capsular polysaccharide synthesis enzyme CapE
  • CJ1293
  • polysaccharide biosynthesis family protein
  • polysaccharide biosynthesis protein CapD
  • UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase
• strand^?: +
• coordinates^?: 1234504..1235622
• synteny block^?: BlockID0005130
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0140 (cap5E)
N315:
SA0148 (capE)
NCTC8325:
SAOUHSC_00118
Newman:
NWMN_0099 (capE)
USA300_FPR3757:
SAUSA300_0156 (cap5E)
04-02981:
SA2981_0154 (capE)
08BA02176:
C248_0142 (capE)
11819-97:
MS7_0147
6850:
RSAU_000107 (capE)
71193:
ST398NM01_0167
ECT-R 2:
ECTR2_110
ED133:
SAOV_0100
ED98:
SAAV_0121 (cap5E)
HO 5096 0412:
SAEMRSA15_01190 (capE)
JH1:
SaurJH1_0144
JH9:
SaurJH9_0139
JKD6008:
SAA6008_00131 (cap5E)
JKD6159:
SAA6159_00137 (cap5E)
LGA251:
SARLGA251_01270 (capE)
M013:
M013TW_0143
MRSA252:
SAR0155 (capE)
MSHR1132:
SAMSHR1132_01270
MSSA476:
SAS0128
Mu3:
SAHV_0152 (capE)
Mu50:
SAV0153 (capE)
MW2:
MW0128 (cap8E)
RF122:
SAB0094 (capE)
ST398:
SAPIG0167
T0131:
SAT0131_00143
TCH60:
HMPREF0772_10345 (galE)
TW20:
SATW20_01640 (capE)
USA300_TCH1516:
USA300HOU_0167 (cap5E)
VC40:
SAVC_00535

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
  N315            MFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
  NCTC8325        MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
  Newman          MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
  USA300_FPR3757  MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
                  **********************:*************************************
  
  COL             VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
  N315            VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
  NCTC8325        VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
  Newman          VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
  USA300_FPR3757  VRDSQSVETAMRDVYYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
                  ************** *********************************************
  
  COL             CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
  N315            CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
  NCTC8325        CLSTDKAAYPINARGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
  Newman          CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
  USA300_FPR3757  CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
                  ************* **********************************************
  
  COL             KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
  N315            KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
  NCTC8325        KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
  Newman          KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
  USA300_FPR3757  KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
                  ************************************************************
  
  COL             LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
  N315            LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
  NCTC8325        LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
  Newman          LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
  USA300_FPR3757  LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
                  ************************************************************
  
  COL             ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
  N315            ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
  NCTC8325        ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
  Newman          ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
  USA300_FPR3757  ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
                  ******************************************