PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000980000
• symbol^?: capF
• synonym:
• description^?: capsular polysaccharide biosynthesis protein Cap8F

  descriptions from strain specific annotations:

  • capsular polysaccharide biosynthesis protein Cap8F
  • capsular polysaccharide biosynthesis protein Cap5F
  • capsular polysaccharide synthesis enzyme CapF
  • capsular polysaccharide biosynthesis protein CapF
  • capsular polysaccharide synthesis protein Cap5F
  • Capsular polysaccharide synthesis enzyme Cap8F
  • capsular polysaccharide synthesis enzyme Cap5F
  • NAD-dependent epimerase/dehydratase
  • NAD dependent epimerase/dehydratase family protein
  • UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase
• strand^?: +
• coordinates^?: 1235629..1236744
• synteny block^?: BlockID0005140
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0141 (cap5F)
N315:
SA0149 (capF)
NCTC8325:
SAOUHSC_00119
Newman:
NWMN_0100 (capF)
USA300_FPR3757:
SAUSA300_0157 (cap5F)
04-02981:
SA2981_0155 (capF)
08BA02176:
C248_0143 (capF)
11819-97:
MS7_0148 (capF)
6850:
RSAU_000108 (capF)
71193:
ST398NM01_0168
ECT-R 2:
ECTR2_111
ED133:
SAOV_0101
ED98:
SAAV_0122 (cap5F)
HO 5096 0412:
SAEMRSA15_01200 (capF)
JH1:
SaurJH1_0145
JH9:
SaurJH9_0140
JKD6008:
SAA6008_00132 (cap5F)
JKD6159:
SAA6159_00138 (cap5F)
LGA251:
SARLGA251_01280 (capF)
M013:
M013TW_0144
MRSA252:
SAR0156 (capF)
MSHR1132:
SAMSHR1132_01280
MSSA476:
SAS0129
Mu3:
SAHV_0153 (capF)
Mu50:
SAV0154 (capF)
MW2:
MW0129 (cap8F)
RF122:
SAB0095 (capF)
ST398:
SAPIG0168
T0131:
SAT0131_00144
TCH60:
HMPREF0772_10344 (cap5F)
TW20:
SATW20_01650 (capF)
USA300_TCH1516:
USA300HOU_0168 (cap5F)
VC40:
SAVC_00540

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFVVHLAGVNRPE
  N315            MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGVNRPE
  NCTC8325        MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFVVHLAGVNRPE
  Newman          MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFVVHLAGVNRPE
  USA300_FPR3757  MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFVVHLAGVNRPE
                  *************************************************:**********
  
  COL             HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEE
  N315            HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEE
  NCTC8325        HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEE
  Newman          HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEE
  USA300_FPR3757  HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEE
                  ************************************************************
  
  COL             YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEI
  N315            YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEI
  NCTC8325        YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEI
  Newman          YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEI
  USA300_FPR3757  YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEI
                  ************************************************************
  
  COL             KRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL
  N315            KRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL
  NCTC8325        KRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL
  Newman          KRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL
  USA300_FPR3757  KRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL
                  ************************************************************
  
  COL             SYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVV
  N315            SYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVV
  NCTC8325        SYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVV
  Newman          SYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVV
  USA300_FPR3757  SYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVV
                  ************************************************************
  
  COL             SGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPN
  N315            SGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPN
  NCTC8325        SGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPN
  Newman          SGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPN
  USA300_FPR3757  SGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPN
                  ************************************************************
  
  COL             QPDTYFLEV
  N315            QPDTYFLEV
  NCTC8325        QPDTYFLEV
  Newman          QPDTYFLEV
  USA300_FPR3757  QPDTYFLEV
                  *********