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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000989000
- symbol?: capK
- synonym:
- description?: capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein Cap5K
- capsular polysaccharide biosynthesis protein CapK
- capsular polysaccharide synthesis protein Cap5K
- capsular polysaccharide synthesis enzyme Cap5K
- capsular polysaccharide synthesis enzyme
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1252687..1258820
- synteny block?: BlockID0005220
- occurrence?: in 58% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0160 (capK)
08BA02176:
C248_0148 (capK)
11819-97:
—
6850:
—
71193:
ST398NM01_0173
ECT-R 2:
ECTR2_116
ED133:
—
ED98:
SAAV_0127 (cap5K)
HO 5096 0412:
SAEMRSA15_01250
JH1:
SaurJH1_0150
JH9:
SaurJH9_0145
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_01330
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0158 (capK)
Mu50:
SAV0159 (capK)
MW2:
—
RF122:
—
ST398:
SAPIG0173
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0173 (cap5K)
VC40:
SAVC_00565
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGN
N315 MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGN
NCTC8325 MAKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGN
Newman -------MDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGN
USA300_FPR3757 MAKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGN
*****************************************************
COL TLNNIRLINMNLYKSNHYYWKFASILLISILIESIALIIVFLYFFNLNIIDIIFLILLNI
N315 TLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNI
NCTC8325 TLNNIRLINMNLYKSNHYYWKFASILLISILIESIALIIVFLYFFNLNIIDIIFLILLNI
Newman TLNNIRLINMNLYKSNHYYWKFASILLISILIESIALIIVFLYFFNLNIIDIIFLILLNI
USA300_FPR3757 TLNNIRLINMNLYKSNHYYWKFASILLISILIESIALIIVFLYFFNLNIIDIIFLILLNI
**********************.************************* ***********
COL LMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYT
N315 LMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYT
NCTC8325 LMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYT
Newman LMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYT
USA300_FPR3757 LMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYT
***************************************** ******************
COL LVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLST
N315 LVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLST
NCTC8325 LVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLST
Newman LVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLST
USA300_FPR3757 LVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLST
************************************************************
COL FIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLIAIAALCLVMIICYPITIIIVS
N315 FIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVS
NCTC8325 FIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLIAIAALCLVMIICYPITIIIVS
Newman FIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLIAIAALCLVMIICYPITIIIVS
USA300_FPR3757 FIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLIAIAALCLVMIICYPITIIIVS
**************************************:****************:****
COL LLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITIL
N315 LLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITIL
NCTC8325 LLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITIL
Newman LLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITIL
USA300_FPR3757 LLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITIL
************************************************************
COL MTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
N315 MTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
NCTC8325 MTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
Newman MTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
USA300_FPR3757 MTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
*****************************************