PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001119000
• symbol^?: —
• synonym:
• description^?: PTS galactitol transporter subunit IIC

  descriptions from strain specific annotations:

  • PTS galactitol transporter subunit IIC
  • PTS system, sorbitol-specific IIC component
  • phosphotransferase system galactitol-specific enzyme II, C component
  • PTS galactitol-specific transporter subunit IIC
  • PTS system transporter
  • PTS family galactitol (gat) porter component IIC
  • galactitol permease iic component (pts system galactitol-specific eiiccomponent) (eiic-gat)
  • PTS galactitol-specific enzyme IIC component
  • PTS system, galactitol-specific IIC component
  • PTS system, galactitol-specific IIC component family protein
  • PTS system galactitol (gat) transporter subunit IIC
  • PTS system galactitol-specific IIC component
  • PTS system galactitol-specific transporter subunit IIC
  • PTS system protein
  • PTS transport system, IIC component
  • PTS transport system transporter subunit IIC
  • putative phosphotransferase D-arabitol specific component IIC
  • putative PTS transport system, IIC component
• strand^?: +
• coordinates^?: 1392460..1393719
• synteny block^?: BlockID0006390
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0232
N315:
SA0238 (gatC)
NCTC8325:
SAOUHSC_00216
Newman:
NWMN_0182
USA300_FPR3757:
SAUSA300_0241
04-02981:
SA2981_0247 (gatC)
08BA02176:
C248_0234
11819-97:
MS7_0235
6850:
RSAU_000192 (gatC2)
71193:
ST398NM01_0259
ECT-R 2:
ECTR2_208
ED133:
SAOV_0186
ED98:
SAAV_0214
HO 5096 0412:
SAEMRSA15_02060
JH1:
SaurJH1_0238
JH9:
SaurJH9_0232
JKD6008:
SAA6008_00220
JKD6159:
SAA6159_00224
LGA251:
SARLGA251_02110
M013:
M013TW_0228
MRSA252:
SAR0242
MSHR1132:
SAMSHR1132_02150
MSSA476:
SAS0223
Mu3:
SAHV_0246 (gatC)
Mu50:
SAV0247 (gatC)
MW2:
MW0223 (gatC)
RF122:
SAB0186
ST398:
SAPIG0259
T0131:
SAT0131_00238
TCH60:
HMPREF0772_10256 (gatC)
TW20:
SATW20_02490
USA300_TCH1516:
USA300HOU_0258 (gatC1)
VC40:
SAVC_00975

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLV
  N315            MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLV
  NCTC8325        MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLV
  Newman          MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLV
  USA300_FPR3757  MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLV
                  ************************************************************
  
  COL             KNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKT
  N315            KNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKT
  NCTC8325        KNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKT
  Newman          KNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKT
  USA300_FPR3757  KNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKT
                  ************************************************************
  
  COL             MNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQIICLKVADWTAPMMSEFFDLPGVS
  N315            MNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQVICLKVADWTAPMMSEFFDLPGVS
  NCTC8325        MNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQIICLKVADWTAPMMSEFFDLPGVS
  Newman          MNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQIICLKVADWTAPMMSEFFDLPGVS
  USA300_FPR3757  MNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQIICLKVADWTAPMMSEFFDLPGVS
                  ************************************:***********************
  
  COL             IATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLA
  N315            IATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLA
  NCTC8325        IATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLA
  Newman          IATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLA
  USA300_FPR3757  IATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLA
                  ************************************************************
  
  COL             GYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAV
  N315            GYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAV
  NCTC8325        GYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAV
  Newman          GYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAV
  USA300_FPR3757  GYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAV
                  ************************************************************
  
  COL             ALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIV
  N315            ALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIV
  NCTC8325        ALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIV
  Newman          ALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIV
  USA300_FPR3757  ALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIV
                  ************************************************************
  
  COL             GTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
  N315            GTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
  NCTC8325        GTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
  Newman          GTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
  USA300_FPR3757  GTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
                  ***********************************************************