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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001139000
- symbol?: lytS
- synonym:
- description?: sensor histidine kinase
- sensor histidine kinase
- two-component sensor histidine kinase
- autolysin sensor histidine kinase
- sensor histidine kinase LytS
- two-component sensor histidine kinase LytS, putative
- sensor protein lytS
- Autolysis histidine kinase LytS
- 5TM Receptors of the LytS-YhcK type transmembrane region
- autolysin sensor kinase
- autolysin sensor kinase protein
- histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
- signal transduction histidine kinase LytS
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1410043..1411797
- synteny block?: BlockID0006590
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0260 (lytS)
08BA02176:
C248_0248 (lytS)
11819-97:
MS7_0250
6850:
RSAU_000207 (lytS)
71193:
ST398NM01_0273
ECT-R 2:
ECTR2_221
ED133:
SAOV_0200
ED98:
SAAV_0228 (lytS)
HO 5096 0412:
SAEMRSA15_02190 (lytS)
JH1:
SaurJH1_0251
JH9:
SaurJH9_0245
JKD6008:
SAA6008_00234 (lytS)
JKD6159:
SAA6159_00237 (lytS)
LGA251:
SARLGA251_02240 (lytS)
M013:
M013TW_0241
MRSA252:
SAR0257 (lytS)
MSHR1132:
SAMSHR1132_02270
MSSA476:
SAS0237
Mu3:
SAHV_0259 (lytS)
Mu50:
SAV0260 (lytS)
MW2:
MW0236 (lytS)
RF122:
SAB0199 (lytS)
ST398:
SAPIG0273
T0131:
SAT0131_00253
TCH60:
HMPREF0772_10242 (lytS)
TW20:
SATW20_02620 (lytS)
USA300_TCH1516:
USA300HOU_0271 (lytS)
VC40:
SAVC_01040
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGI
N315 MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGI
NCTC8325 -----MLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGI
Newman MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGI
USA300_FPR3757 -----MLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGI
*******************************************************
COL VIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGAD
N315 VIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGAD
NCTC8325 VIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGAD
Newman VIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGAD
USA300_FPR3757 VIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGAD
************************************************************
COL AQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAV
N315 AQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAV
NCTC8325 AQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAV
Newman AQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAV
USA300_FPR3757 AQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAV
************************************************************
COL DLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNR
N315 DLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNR
NCTC8325 DLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNR
Newman DLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNR
USA300_FPR3757 DLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNR
************************************************************
COL ESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKE
N315 ESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKE
NCTC8325 ESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKE
Newman ESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKE
USA300_FPR3757 ESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKE
************************************************************
COL VHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFS
N315 VHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFS
NCTC8325 VHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFS
Newman VHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFS
USA300_FPR3757 VHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFS
************************************************************
COL SQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYF
N315 SQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYF
NCTC8325 SQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYF
Newman SQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYF
USA300_FPR3757 SQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYF
************************************************************
COL FRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQIL
N315 FRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQIL
NCTC8325 FRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQIL
Newman FRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQIL
USA300_FPR3757 FRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQIL
************************************************************
COL VENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGT
N315 VENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGT
NCTC8325 VENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGT
Newman VENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGT
USA300_FPR3757 VENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGT
************************************************************
COL GSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
N315 GSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
NCTC8325 GSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
Newman GSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
USA300_FPR3757 GSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
********************************************