⊟Summary[edit | edit source]
- pan ID?: SAUPAN001207000
- symbol?: —
- synonym:
- description?: TIGR01741 family protein
- TIGR01741 family protein
- pseudogene
- Repetitive hypothetical protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1479926..1488052
- synteny block?: BlockID0007190
- occurrence?: in 53% of 34 strains
essI (esaG) : tandem EssD nuclease immunity protein paralogue [1]
• This locus is highly prone to recombination leading to gene duplication / loss. Gene nomenclature is confusing and appears to be numbered sequentially by position in the genome and is not intended to show homology between strains (e.g. the first instance of essI/esaG in COL may have the greatest homology with the sixth instance in FPR3757 but the gene names would still be different [i.e. essI1/esaG1 and essI6/esaG6 in COL and FPR3757, respectively]). Likewise, pseudogenes are frequent and assigned gene nomenclature in this locus. As appropriate, please append a numeral to the gene names provided here consistent with the number of gene duplications in your genome of interest.
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MTFEEKISKLYNEIANEISSMIPVEWEKVYTMAYIDDGGGEVFFNYTKPGSDDLNYYTDI
Newman -----------------------------------------MKYSLIILNSDELNYYTDI
USA300_FPR3757 ME--------------------------------------EVKYSLIILNSDELNYYTDI
: :. .**:*******
N315 PKEYNISVQVFDDLWMDLYDLFEELRDLFKEEDLEPWTSCEFDFTSEGKLKVSLDYIDWI
Newman PKEYNISVQVFDDLWMDLYDLFEELRNLFKEEGLEPWTSCEFDFTREGKLKVSFDYIDWI
USA300_FPR3757 PKEYNISVQVFDDLWMDLYDLFEELRNLFKEEGLEPWTSCEFDFTREGKLKVSFDYIDWI
**************************:*****.************ *******:******
N315 NTEFDQLGRENYYMYKKFGVIPEMEYEMEEIKEIEQYIKEQDEAEL
Newman NSEFGQVGRQNYYKYRKFGILPETEYEINKVKEIEQYIKEQEEAEL
USA300_FPR3757 NSEFGQVGRQNYYKYRKFGILPETEYEINKVKEIEQYIKEQDEAEL
*:**.*:**:*** *:***::** ***::::**********:****
- ↑ Ryan Jay Ohr, Mark Anderson, Miaomiao Shi, Olaf Schneewind, Dominique Missiakas
EssD, a Nuclease Effector of the Staphylococcus aureus ESS Pathway.
J Bacteriol: 2017, 199(1);
[PubMed:27795323] [WorldCat.org] [DOI] (I e)Stephen R Garrett, Giuseppina Mariano, Jo Dicks, Tracy Palmer
Homologous recombination between tandem paralogues drives evolution of a subset of type VII secretion system immunity genes in firmicute bacteria.
Microb Genom: 2022, 8(8);
[PubMed:35960642] [WorldCat.org] [DOI] (I p)