PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001210000
• symbol^?: —
• synonym:
• description^?: DUF5079 domain-containing protein

  descriptions from strain specific annotations:

  • DUF5079 domain-containing protein
  • DUF5079 family protein
  • lipoprotein, putative
  • putative lipoprotein
• strand^?: +
• coordinates^?: 1480733..1482508
• synteny block^?: BlockID0007220
• occurrence^?: in 55% of 33 strains

⊟Orthologs

COL:
SACOL0283
N315:
SA0283
NCTC8325:
SAOUHSC_00270
Newman:
NWMN_0230
USA300_FPR3757:
SAUSA300_0290
04-02981:
SA2981_0294
08BA02176:
—
11819-97:
MS7_0285
6850:
RSAU_000240
71193:
—
ECT-R 2:
ECTR2_255
ED133:
—
ED98:
SAAV_0262
HO 5096 0412:
—
JH1:
SaurJH1_0285
JH9:
SaurJH9_0278
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_02620
MSSA476:
—
Mu3:
SAHV_0292
Mu50:
SAV0295
MW2:
—
RF122:
SAB0235
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0309
VC40:
SAVC_01225

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTTKENIDTLRKPGAQALSLISLFLILFSCLTFFFGLDYERFPNYLKITTIIELIIIVIS
  N315            MTTKENIDTLRKPGAQALSLISLFLILFSCLTFFFGLDYERFPNYLKITTIIELIIIVIS
  NCTC8325        MTTKENIDTLRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
  Newman          MTTKENIDTLRKPGAQALSLISLFLILFSCLTFFFGLDYERFPNYLKITTIIELIIIVIS
  USA300_FPR3757  MTTKENIDTLRKPGAQALSLISLFLILFSCLTFFFGLDYERFPNYLKITTIIELIIIVIS
                  ******************** ***:********************************:**
  
  COL             LLQWIRFIDFEKESAQKYKKIYARFLVVINVLTTITVVFALCNLYYFAAVQNHYDLFNYW
  N315            LLQWIRFIDFEKESARKYKKIYARFLVIINVLTTITVVFALCNLYYFAAVQNHYDLFNYW
  NCTC8325        LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
  Newman          LLQWIRFIDFEKESAQKYKKIYARFLVVINVLTTITVVFALCNLYYFAAVQNHYDLFNYW
  USA300_FPR3757  LLQWIRFIDFEKESAQKYKKIYARFLVVINVLTTITVVFALCNLYYFAAVQNHYDLFNYW
                  ***************:***********:********.*** ******.************
  
  COL             LMGSISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYI
  N315            LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYI
  NCTC8325        LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYI
  Newman          LMGSISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYI
  USA300_FPR3757  LMGSISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYI
                  ***:********************************************************
  
  COL             LVPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD
  N315            LIPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD
  NCTC8325        LVPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD
  Newman          LVPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD
  USA300_FPR3757  LVPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD
                  *:*********************************************