PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001214000
• symbol^?: —
• synonym:
• description^?: TIGR01741 family protein

  descriptions from strain specific annotations:

  • TIGR01741 family protein
  • Repetitive hypothetical protein
• strand^?: +
• coordinates^?: 1488063..1489405
• synteny block^?: BlockID0007260
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0292
N315:
SA0288
NCTC8325:
—
Newman:
NWMN_0239
USA300_FPR3757:
—
04-02981:
SA2981_0299
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_260
ED133:
SAOV_0239
ED98:
SAAV_0267
HO 5096 0412:
—
JH1:
SaurJH1_0290
JH9:
SaurJH9_0283
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0275
Mu3:
SAHV_0297
Mu50:
SAV0300
MW2:
MW0275
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_10197
TW20:
—
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

COL
N315
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTFEEKLSQMYNKIASEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSDELNYYSDI
  N315            MTFEEKLSQMYNEIANKISSMIPVEWEKVYAMAYVNERSGEVFYNYTEPRSDELFYYTSV
  Newman          MTFEEKLSQMYNKIASEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSDELNYYSDI
                  ************:**.:**.*******:*:::***.:::***::***:* **** **:.:
  
  COL             PKDCNVSKDIFKNSWFKVYRMFDELRETFKEEELEPWTSCEFDFTRDGKLNVSFDYIDWV
  N315            LNKYNISRSEFMDSVYELYKQFDKLRDLFKEEGLEPWTSCEFDFTRDGKLNVSFDYIDWA
  Newman          PKDCNVSKDIFKNSWFKVYRMFDELRETFKEEELEPWTSCEFDFTRDGKLNVSFDYIDWV
                   :. *:*:. * :* :::*: **:**: **** **************************.
  
  COL             NSEFGPMGREHYYMYKKFGIWPEKEYAINWVEKIKDYVKEQDEAEL
  N315            NSEFGQMGREHYYMYKKFGIWPEKEYAINWVKK-------------
  Newman          NSEFGPMGREHYYMYKKFGIWPEKEYAINWVEKIKDYVKEQDEAEL
                  ***** *************************:*