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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001319000
- symbol?: —
- synonym:
- description?: phi PVL ORF 30-like protein
- phi PVL ORF 30-like protein
- phiSLT ORF204-like protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1600696..1601310
- synteny block?: BlockID0008170
- occurrence?: in 21% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_1040
JH9:
SaurJH9_1021
JKD6008:
—
JKD6159:
SAA6159_01416
LGA251:
—
M013:
M013TW_1501
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_1489
VC40:
—
⊟Genome Viewer[edit | edit source]
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
NCTC8325 MTQFLGALLLTGVLGYIPYKYLTMIGLVSEKNKIINTPVLLIFSIETCLIWFYTFIIFNN
USA300_FPR3757 MTQFLGALLLTGVLGYIPYKYLTMIGLVSEKNKVINTPVLLIFSIETCLIWFYSFIIFNN
*********************************:*******************:******
NCTC8325 VDLKNLSLLQLLTGLKANIWFLIIFVLTVLVFNPLIVKFIIWLINETRKFMNLDCISLLD
USA300_FPR3757 VDLKNLNLIQLLTGLKANILFLFIFVLTVFVFNPLIVKFIIWLINITRKFMKLDCISLLD
******.*:********** **:******:*************** *****:********
NCTC8325 KRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDFDLLEVERQDFKVSDLPSNDE
USA300_FPR3757 KRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDFDLLEVERQDFKVSDLPSNDE
************************************************************
NCTC8325 LYIKHTLVDLKQQIKLDLYLMNEY
USA300_FPR3757 LYIKHTLVDLKQQIKLDLYLMNEY
************************