PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001627000
• symbol^?: —
• synonym:
• description^?: phage holin

  descriptions from strain specific annotations:

  • phage holin
  • holin protein
  • phiSLT ORF100b-like protein, holin
  • prophage L54a, holin
  • Holin
  • holin, SPP1 family
  • phage-related holin
  • SPP1 family prophage L54a
• strand^?: -
• coordinates^?: 1920705..1921007
• synteny block^?: BlockID0010580
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL0388
N315:
—
NCTC8325:
SAOUHSC_01516
Newman:
NWMN_1770
USA300_FPR3757:
SAUSA300_1384
04-02981:
—
08BA02176:
C248_0370
11819-97:
MS7_1447 (xhlB)
6850:
—
71193:
ST398NM01_0395
ECT-R 2:
—
ED133:
SAOV_0341
ED98:
SAAV_2011
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_1439
MRSA252:
SAR1498
MSHR1132:
—
MSSA476:
SAS0953
Mu3:
—
Mu50:
—
MW2:
MW1381
RF122:
SAB0266
ST398:
SAPIG0395 (xhlB)
T0131:
—
TCH60:
HMPREF0772_11711
TW20:
—
USA300_TCH1516:
USA300HOU_1433
VC40:
—

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
  NCTC8325        MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
  Newman          MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
  USA300_FPR3757  MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
                  ************************************************************
  
  COL             WANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG
  NCTC8325        WANQKLKKYKAENKYRKATGQAPIKEVMTPTNMNDTNDLG
  Newman          WANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG
  USA300_FPR3757  WANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG
                  ************.***************************