Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001769000
- symbol?: —
- description?: phi-like protein
- phi-like protein
- VRR-NUC domain-containing protein
- phi phage protein
- phi related protein
- VRR-NUC
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2194938..2195251
- synteny block?: BlockID0011680
- occurrence?: in 42% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
C248_0344
11819-97:
MS7_1473
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_13790
JH1:
SaurJH1_1074
JH9:
SaurJH9_1054
JKD6008:
—
JKD6159:
SAA6159_01383
LGA251:
—
M013:
—
MRSA252:
SAR1524
MSHR1132:
—
MSSA476:
SAS0927
Mu3:
—
Mu50:
—
MW2:
MW1406
RF122:
—
ST398:
SAPIG0368
T0131:
—
TCH60:
HMPREF0772_11685
TW20:
—
USA300_TCH1516:
USA300HOU_1457
VC40:
—
⊟Genome Viewer[edit | edit source]
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
NCTC8325 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ
USA300_FPR3757 MKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ
**************:*********************************************
NCTC8325 KYVHRQFENRDHKVYVLWNKEQVNTFIRMVGGTFGD
USA300_FPR3757 KYVHRQFENRDHKVYVLWNKEQVNTFIRMVGGTFGD
************************************