PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001815000
• symbol^?: —
• synonym:
• description^?: phiSLT ORF488-like protein

  descriptions from strain specific annotations:

  • phiSLT ORF488-like protein
  • SLT orf 488-like protein
  • phage-like protein
  • phage protein
  • phi SLT phage protein
• strand^?: -
• coordinates^?: 2249574..2251050
• synteny block^?: BlockID0011910
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL0384
N315:
—
NCTC8325:
SAOUHSC_01520
Newman:
—
USA300_FPR3757:
SAUSA300_1388
04-02981:
—
08BA02176:
C248_0366
11819-97:
MS7_1451
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_0336
ED98:
SAAV_2015
HO 5096 0412:
SAEMRSA15_13570
JH1:
SaurJH1_1096
JH9:
SaurJH9_1075
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1502
MSHR1132:
—
MSSA476:
SAS0949
Mu3:
—
Mu50:
—
MW2:
MW1385
RF122:
SAB0261
ST398:
SAPIG0391
T0131:
—
TCH60:
HMPREF0772_11707
TW20:
—
USA300_TCH1516:
USA300HOU_1436
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLFLSEENIKARI
  NCTC8325        MSNLEKSVAINLENTAHYGNISNLDITFRTGESDSSVLLFNITKNNQPLLLSEENIKARI
  USA300_FPR3757  MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLLLSEENIKARI
                  ****************** *********************** ******:**********
  
  COL             AIRGKGVMVVAPLEILDPFKGVLKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
  NCTC8325        AIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
  USA300_FPR3757  AIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
                  *********************:**************************************
  
  COL             FNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
  NCTC8325        FNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
  USA300_FPR3757  FNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
                  ********* **************************************************
  
  COL             DIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
  NCTC8325        DIQIAKSSSIDELKQLANSHISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
  USA300_FPR3757  DIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
                  *******************:****************************************
  
  COL             SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVE
  NCTC8325        SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRGVSTNGTVE
  USA300_FPR3757  SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVE
                  ***************************************************.********
  
  COL             YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
  NCTC8325        YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
  USA300_FPR3757  YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
                  ************************************************************
  
  COL             SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
  NCTC8325        SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
  USA300_FPR3757  SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
                  ************************************************************
  
  COL             GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
  NCTC8325        GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
  USA300_FPR3757  GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
                  ************************************************************
  
  COL             NKIIGVRK
  NCTC8325        NKIIGVRK
  USA300_FPR3757  NKIIGVRK
                  ********