PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001818000
• symbol^?: —
• synonym:
• description^?: peptidase

  descriptions from strain specific annotations:

  • peptidase
  • phiSLT ORF527-like protein
  • SLT orf 527-like protein
  • phage protein
  • phi SLT phage protein
  • prophage endopeptidase tail family protein
• strand^?: -
• coordinates^?: 2253607..2256605
• synteny block^?: BlockID0011940
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL0381
N315:
—
NCTC8325:
SAOUHSC_01523
Newman:
—
USA300_FPR3757:
SAUSA300_1391
04-02981:
—
08BA02176:
C248_0363
11819-97:
MS7_1454
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_0333
ED98:
SAAV_2018
HO 5096 0412:
SAEMRSA15_13600
JH1:
SaurJH1_1093
JH9:
SaurJH9_1072
JKD6008:
—
JKD6159:
SAA6159_01363
LGA251:
—
M013:
—
MRSA252:
SAR1505
MSHR1132:
—
MSSA476:
SAS0946
Mu3:
—
Mu50:
—
MW2:
MW1388
RF122:
—
ST398:
SAPIG0388
T0131:
—
TCH60:
HMPREF0772_11704
TW20:
—
USA300_TCH1516:
USA300HOU_1439
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDYHDHLSVMDFNELICENLLDVDYGSFKEYYELNEARYITFTVYRTTHNSFVFDLLICE
  NCTC8325        MDYHDHLSVMDFNELICENLLDVDYGSFKEYYELNEARYITFTVYRTTHNSFVFDLLICE
  USA300_FPR3757  MDYHDHLSVMDFNELICENLLDVDYGSFKEYYELNEARYITFTVYRTTHNSFVFDLLICE
                  ************************************************************
  
  COL             NFIIYHGEKYTIKQTAPKVEGDKVFIEVTAYHIMYEFQNHSVESNKLDDDSSETGKTPEY
  NCTC8325        NFIIYHGEKYTIKQTAPKVEGDKVFIEVTAYHIMYEFQNHSVESNKLDDDSSETGKTPEY
  USA300_FPR3757  NFIIYHGEKYTIKQTAPKVEGDKVFIEVTAYHIMYEFQNHSVESNKLDDDSSETGKTPEY
                  ************************************************************
  
  COL             SLDEYLRYGFANQKTSVKMTYKIIGDFKRKVPIDELGNKNGLEYCKEAVDLFGCIIYPND
  NCTC8325        SLDEYLRYGFANQKTSVKMTYKIIGDFKRKIPIDELGNKNGLEYCKEAVDLFGCIIYPND
  USA300_FPR3757  SLDEYLRYGFANQKTSVKMTYKIIGDFKRKVPIDELGNKNGLEYCKEAVDLFGCIIYPND
                  ******************************:*****************************
  
  COL             TEIGFYSPETFYQRSEKVIRYQYNTDTVSATVSTLELRTAIKVFGKKYTAEEKKNYNPIR
  NCTC8325        TEICFYSPETFYQRSEKVIRYQYNTDTVSATVSTLELRTAIKVFGKKYTAEEKKNYNPIR
  USA300_FPR3757  TEIGFYSPETFYQRSEKVIRYQYNTDTVSATVSTLELRTAIKVFGKKYTAEEKKNYNPIR
                  *** ********************************************************
  
  COL             TTDIKYSNGFIKEGTYRTETIGSKATINFDCKYGNETVRFTIKKGSQGGIYKLILDGKQI
  NCTC8325        TTDIKYSNGFIKEGTYRTATIGSKATINFDCKYGNETVRFTIKKGSQGGIYKLILDGKQI
  USA300_FPR3757  TTDIKYSNGFIKEGTYRTETIGSKATINFDCKYGNETVRFTIKKGSQGGIYKLILDGKQI
                  ****************** *****************************************
  
  COL             KQISCFAKSVQSETIDLIKNIDKGKHVLEMIFLGEDPKNRIDISSNKKAKPCMYVGTEKS
  NCTC8325        KQISCFAKSVQSETIDLIKNIDKGKHVLEMIFLGEDPKNRIDISSNKKAKPCMYVGTEKS
  USA300_FPR3757  KQISCFAKSVQSETIDLIKNIDKGKHVLEMIFLGEDPKNRIDISSNKKAKPCMYVGTEKS
                  ************************************************************
  
  COL             TVLNLIADNSGRNQYKAIVDYVADSAKQFGIRYANTQTNEDIETQDKLLEFAKKQINDTP
  NCTC8325        TVLNLIADNSGRNQYKAIVDYVADSAKQFGIRYANTQTNEDIETQDKLLEFAKKQINDTP
  USA300_FPR3757  TVLNLIADNSGRNQYKAIVDYVADSAKQFGIRYANTQTNEDIETQDKLLEFAKKQINDTP
                  ************************************************************
  
  COL             KTELDVNYIGYEKIEPRDSVFFVHELMGYNTELKVVKLDRSHPFVNAIDEVSFSNEIKDM
  NCTC8325        KTELDVNYIGYEKIEPRDSVFFVHELMGYNTELKVVKLDRSHPFVNAIDEVSFSNEIKDM
  USA300_FPR3757  KTELDVNYIGYEKIEPRDSVFFVHELMGYNTELKVVKLDRSHPFVNAIDEVSFSNEIKDM
                  ************************************************************
  
  COL             VQIQQALNRRVIAQDNRYNYQANRINHLYTSTLNSPFETMDIGSVLI
  NCTC8325        VQIQQALNRRVIAQDNRYNYQANRINHLYTSTLNSPFETMDIGSVLI
  USA300_FPR3757  VQIQQALNRRVIAQDNRYNYQANRINHLYTSTLNSPFETMDIGSVLI
                  ***********************************************