PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001836000
• symbol^?: —
• synonym:
• description^?: HNH endonuclease

  descriptions from strain specific annotations:

  • HNH endonuclease
  • bacteriophage L54a HNH endonuclease family protein
  • phiSLT ORF 104b-like protein
  • prophage L54a, HNH endonuclease
  • bacteriophage L54a, HNH endonuclease family protein
  • HNH endonuclease family protein
  • phage endonuclease
  • phage protein
  • prophage L54a
• strand^?: -
• coordinates^?: 2286736..2287056
• synteny block^?: BlockID0012120
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0365
N315:
—
NCTC8325:
SAOUHSC_01540
Newman:
—
USA300_FPR3757:
SAUSA300_1406
04-02981:
—
08BA02176:
C248_0347
11819-97:
MS7_1470
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2034
HO 5096 0412:
SAEMRSA15_13760
JH1:
SaurJH1_1077
JH9:
SaurJH9_1057
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1521
MSHR1132:
—
MSSA476:
SAS0930
Mu3:
—
Mu50:
—
MW2:
MW1403
RF122:
—
ST398:
SAPIG0371
T0131:
—
TCH60:
HMPREF0772_11688
TW20:
—
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNYLCQMCLREDIITDAKIVHHII
  NCTC8325        MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNHLCQMCLREDIVTDANIVHHII
  USA300_FPR3757  MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNHLCQMCLREDIVTDANIVHHII
                  **************************************:**********:***:******
  
  COL             YVDEDFNKALDLDNLMSVCYSCHNKIHANDNDKSNLKKIRVLKI
  NCTC8325        YVDEDFNKALDLDNLMSVCYSCHNKIHANDNDKSNLKKIRVLKI
  USA300_FPR3757  YVDEDFNKALELDNLMSVCYGCHNKIHANGNDKSNLKKIRVLKI
                  **********:*********.********.**************